Job Description P19769 Confidence 97.90% Date Thu Jan 5 11:37:35 GMT 2012 Rank 19 Aligned Residues 86 % Identity 12% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.															.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	N	E	L	R	Q	F	Y	P	L	D	E	L	L	R	A	A	E	I	P	R	S	T	F	Y	Y	H	L	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	K	P	D	K	Y	A	D	V	K	K	R	I	S	E	I	Y	H	E	N	R	G	R	Y	G	Y	R	R	V	T	L	S	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	V	E	L	A	H	S	G	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S	I	F	A	W	E	I	R	D	R	L	L
Template Known Secondary structure									T	T											T																	S			S					S					S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		68	.	70	.	.	.					.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		H	R	E	G	K	Q	.	.	.	.	I	N	H	K	A	V	Q	R	L	M	G	T	L	S
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence		S	E	G	V	C	T	N	D	N	I	P	S	V	S	S	I	N	R	V	L	R	N	L	A
Template Known Secondary structure			T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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