Job Description P19769 Confidence 99.07% Date Thu Jan 5 11:37:35 GMT 2012 Rank 17 Aligned Residues 149 % Identity 21% Template c3l2tB_ PDB info PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) Resolution 2.85 Å

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		118	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		A	T	R	P	N	E	K	W	V	T	D	V	.	T	E	F	A	V	N	G	R	K	L	Y	L	S	P	V	I	D	L	F	N	N	E	V	I	S	Y	S	L	S	E	R	P	V	M	N	M	V	E	N	M	L	D	Q	A	F	K	K	L	N	P	H	E	H	P	V	L	H	S	D	Q	G	W	Q	Y	R	M	R
Query Conservation														.
Alig confidence														.																																									.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		P	Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	M	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	.	.	.	.	N	V	L	T	S	I	A	I	P	K	V	I	H	S	D	Q	G	A	A	F	T	S	S
Template Known Secondary structure					T	T	S											S		B	T	T	B									T	T	T									S	S	S	S									.	.	.	.				T	T	T				S												S
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	Q	N	I	L	K	E	H	G	I	K	Q	S	M	S	R	K	G	N	C	L	D	N	A	V	V	E	C	F	F	G	T	L	K	S	E	C	F	Y	L	D	E	F	S	N	I	S	E	L	K	D	A	V	T	E	Y	I	E	Y	Y	N	S	R	R	I	S	L	K	L	K	G	L	T	P	I	E
Query Conservation
Alig confidence																																						.																											.								.
Template Conservation																																						.																											.								.
Template Sequence		T	F	A	E	W	A	K	E	R	G	I	H	L	E	F	S	T	P	Y	H	P	Q	S	S	G	K	V	E	R	K	N	S	D	I	K	R	.	L	L	T	K	L	L	V	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L	N	N	.	T	Y	S	P	V	L	K	.	Y	T	P	H	Q
Template Known Secondary structure										T	T								T	T																		.							T	T	S	T	T		G	G	G	G										T	.	S			T	T	T	T	.
Template Predicted Secondary structure																																						.																											.								.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.		.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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