Job Description P19769 Confidence 99.33% Date Thu Jan 5 11:37:35 GMT 2012 Rank 9 Aligned Residues 143 % Identity 21% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	W	V	T	D	V	T	E	F	A	V	N	G	R	K	L	Y	L	S	P	V	I	D	L	F	N	N	E	V	I	S	Y	S	L	S	E	R	P	V	M	N	M	V	E	N	M	L	D	Q	A	F	K	K	L	N	P	H	E	H	P	V	L	H	S	D	Q	G	W	Q	Y	R	M	R	R	Y	Q	N	I	L
Query Conservation
Alig confidence												.	.	.	.																																										.	.	.	.
Template Conservation												.	.	.	.																																										.	.	.	.
Template Sequence		H	L	W	Q	M	D	N	T	H	W	.	.	.	.	N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	T	.	.	.	.	V	L	H	L	H	S	D	N	G	P	C	F	T	A	H	R	I	E	N	L	C
Template Known Secondary structure												.	.	.	.	T	T									T	T	T	T								S	S	S																S		.	.	.	.		S						S						S
Template Predicted Secondary structure												.	.	.	.																																										.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		K	E	H	G	I	K	Q	S	M	S	R	K	G	N	C	L	D	N	A	V	V	E	C	F	F	G	T	L	K	S	E	C	F	Y	L	D	E	F	S	N	I	S	E	L	K	D	A	V	T	E	Y	I	E	Y	Y	N	S	R	R	I	S	L	K	L	K	G	L	T	P	I	E	.	Y	R	N	Q
Query Conservation																																																																									.
Alig confidence																																										.	.															.	.														.
Template Conservation																																										.	.															.	.
Template Sequence		K	Y	L	G	I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	.	.	T	V	E	A	A	L	S	L	A	L	V	S	L	N	.	.	K	K	R	G	G	I	G	G	H	T	P	Y	E	I	Y	L	E	S
Template Known Secondary structure				T	T						S	S		S																							G	G	G		S	.	.	S														.	.		S				G	G	G
Template Predicted Secondary structure																																										.	.															.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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