Job Description P19769 Confidence 99.14% Date Thu Jan 5 11:37:35 GMT 2012 Rank 16 Aligned Residues 143 % Identity 17% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	N	E	K	W	V	T	D	V	T	E	F	A	V	N	G	R	K	L	Y	L	S	P	V	I	D	L	F	N	N	E	V	I	S	Y	S	L	S	E	R	P	V	M	N	M	V	E	N	M	L	D	Q	A	F	K	K	L	N	P	H	E	H	P	V	L	H	S	D	Q	G	W	Q	Y	R	M	R	R	Y	Q
Query Conservation
Alig confidence															.	.	.	.																																								.	.	.	.
Template Conservation															.	.	.	.																																								.	.	.	.
Template Sequence		K	M	I	D	H	W	Q	V	D	Y	T	H	Y	.	.	.	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	.	.	.	.	F	A	P	K	S	L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q
Template Known Secondary structure															.	.	.	.	S	S									T	T	T									S																		.	.	.	.	S			S						S
Template Predicted Secondary structure															.	.	.	.																																								.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	L	K	E	H	G	I	K	Q	S	M	S	R	K	G	N	C	L	D	N	A	V	V	E	C	F	F	G	T	L	K	S	E	C	F	Y	L	D	E	F	S	N	I	S	E	L	K	D	A	V	T	E	Y	I	E	Y	Y	N	S	R	R	I	S	L	K	L	K	G	L	T	P	I	E	Y
Query Conservation
Alig confidence																																													.	.																	.							.
Template Conservation																																													.	.																	.							.
Template Sequence		L	L	M	K	Y	L	G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	.	.	A	F	E	S	A	L	A	G	T	L	I	T	L	N	I	K	.	R	K	G	G	L	G	.	T	S	P	M	D	I
Template Known Secondary structure								T						S	S				T	T																				G	G	G		S	.	.	S														T	T	.			B	T	T	T	.	B
Template Predicted Secondary structure																																													.	.																	.							.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.		.	.	.	.	.	200

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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