Job Description P19769 Confidence 99.20% Date Thu Jan 5 11:37:35 GMT 2012 Rank 15 Aligned Residues 243 % Identity 14% Template c3hosA_ PDB info PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Resolution 3.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20								.	.	.	.	.	.	.	.	.	30	.	.														.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	N	E	L	R	Q	F	Y	P	L	D	E	L	L	R	A	A	.	.	.	.	.	.	.	E	I	P	R	S	T	F	Y	Y	H	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	S	K	P	D	K	Y	A	D	V	K	K	R	I	S	E	I	Y	H	E	N	R	G	R	Y	G	Y	R	R
Query Conservation																				.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																																														.	.
Template Sequence		L	I	F	C	F	H	L	K	K	T	A	A	E	S	H	R	M	L	V	E	A	F	G	E	Q	V	P	T	V	K	T	C	E	R	W	F	Q	R	F	K	S	G	D	F	D	V	D	D	K	E	H	G	K	P	P	K	R	Y	E	D	.	.	A	E	L	Q	A	L	L	D	E	D	D	A	Q	T	Q	K	Q	L
Template Known Secondary structure								T	T														T		S		S															T	T				S	S										S	S			.	.										S	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		V	T	L	S	L	H	R	E	G	K	Q	I	N	H	K	A	V	Q	R	L	M	G	T	L	S	L	K	A	A	I	K	V	K	R	Y	R	S	Y	R	G	E	V	G	Q	T	A	P	N	V	L	Q	R	D	.	.	.	.	F	K	A	T	R	P	N	E	K	W	V	T	D	V	T	E	F	A	V	N	G	R	K
Query Conservation																																																							.	.	.	.
Alig confidence		.	.	.	.	.	.																																																.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	E	Q	L	E	V	S	Q	Q	A	V	S	N	R	L	R	E	M	G	K	I	Q	K	V	G	R	W	V	P	H	E	L	N	E	R	Q	M	E	R	R	K	N	T	C	E	I	L	L	S	R	Y	K	R	K	S	F	L	H	R	I	V	T	G	D	E	K	W	I	F	F	V	N	P	K
Template Known Secondary structure		.	.	.	.	.	.		T	T	T	T	S												T	T										S																											G	G	G	G											S	B
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
																									139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	L	S	P	V	I	D	L	F	N	N	E	V	I	S	Y	S	L	S	E	R	P	V	M	N	M	V	E	N	M	L	D	Q	A	F	K	K	L	N	.	.	.	.	.	P	H	E	H	P	V	L	H	S	D	Q	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Conservation
Template Sequence		R	K	K	S	Y	V	D	P	G	Q	P	A	T	S	T	A	R	P	N	R	F	G	K	K	T	M	L	C	V	W	W	D	Q	S	G	V	I	Y	Y	E	L	L	K	P	G	E	T	V	N	A	A	R	Y	Q	Q	Q	L	I	N	L	N	R	A	L	Q	R	K	R	P	E	Y	R	V	I	F	L	H	D	N	A
Template Known Secondary structure								S	S	S											S	S												T	T										S	S																								S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		W	Q	Y	R	M	R	R	Y	Q	N	I	L	K	E	H	G	I	K	Q	S	M	S	R	K	G	N	C	L	D	N	A	V	V	E	.	C	F	F	G	T	L	K	S	E	C	F	Y	L	D	E	F	S	N	I	S	E	L	K	D	A	V	T	E	Y	I	E
Query Conservation																																				.
Alig confidence																																.				.									.
Template Conservation																																.													.
Template Sequence		P	S	H	T	A	R	A	V	R	D	T	L	E	T	L	N	W	E	V	L	P	H	A	A	Y	S	P	D	L	A	.	P	S	D	Y	H	L	F	A	S	M	G	H	.	A	L	A	E	Q	R	F	D	S	Y	E	S	V	K	K	W	L	D	E	W	F	A
Template Known Secondary structure		S	T	T	S										T	T									T	T		T	T	S		.					T								.		T	T	T		B		S	S
Template Predicted Secondary structure																																.													.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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