Job Description P19769 Confidence 99.31% Date Thu Jan 5 11:37:35 GMT 2012 Rank 10 Aligned Residues 140 % Identity 15% Template c1k6yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase Resolution 2.40 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	F	K	A	T	R	P	N	E	K	W	V	T	D	V	T	E	F	A	V	N	G	R	K	L	Y	L	S	P	V	I	D	L	F	N	N	E	V	I	S	Y	S	L	S	E	R	P	V	M	N	M	V	E	N	M	L	D	Q	A	F	K	K	L	N	P	H	E	H	P	V	L	H	S	D	Q	G	W	Q	Y
Query Conservation
Alig confidence																						.	.	.	.																																			.	.	.	.
Template Conservation																						.	.	.	.																																			.	.	.	.
Template Sequence		D	K	C	Q	L	K	C	S	P	G	I	W	Q	L	D	C	T	H	L	E	.	.	.	.	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	.	.	.	.	L	A	G	R	W	P	V	K	T	V	H	T	D	N	G	S	N	F
Template Known Secondary structure		T	T							T	T										T	.	.	.	.	T									T	T	T	T								S	S	S												.	.	.	.					S
Template Predicted Secondary structure																						.	.	.	.																																			.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	R	R	Y	Q	N	I	L	K	E	H	G	I	K	Q	S	M	S	R	K	G	N	C	L	D	N	A	V	V	E	C	F	F	G	T	L	K	S	E	C	F	Y	L	D	E	F	S	N	I	S	E	L	K	D	A	V	T	E	Y	I	E	Y	Y	N	S	R	R	I	S	L	K	L	K	G	L	T	P	I	E
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.																	.											.																	.
Template Conservation																.	.	.	.	.	.	.	.	.																	.											.																	.
Template Sequence		T	S	T	T	V	K	A	A	C	D	W	A	G	I	.	.	.	.	.	.	.	.	.	K	Q	E	D	G	V	I	E	S	M	N	K	E	L	K	K	.	I	I	G	Q	V	R	D	Q	A	E	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	.	R	K	G	G	I	G	G	Y	S	A	G	E
Template Known Secondary structure			S										T	T		.	.	.	.	.	.	.	.	.																	.						G	G	G		S	.	S															S	.				T	T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																	.											.																	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.										.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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