Job Description P19769 Confidence 99.57% Date Thu Jan 5 11:37:35 GMT 2012 Rank 5 Aligned Residues 151 % Identity 17% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	P	N	E	K	W	V	T	D	V	T	E	F	A	V	N	G	R	K	L	Y	L	S	P	V	I	D	L	F	N	N	E	V	I	S	Y	S	L	S	E	R	P	V	M	N	M	V	E	N	M	L	D	Q	A	F	K	K	L	N	P	H	E	H	P	V	L	H	S	D	Q	G	W	Q	Y	R	M	R	R
Query Conservation
Alig confidence																																											.	.	.
Template Conservation																																											.	.	.
Template Sequence		G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	.	.	.	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	G	R	P	K	A	I	K	T	D	N	G	S	C	F	T	S	K	S
Template Known Secondary structure			S	S	T	T	S										G	G	G		S	S									T	T	T									S	.	.	.	S																					S						S						S
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.							.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		Y	Q	N	I	L	K	E	H	G	I	K	Q	S	M	S	R	K	G	N	C	L	D	N	A	V	V	E	C	F	F	G	T	L	K	S	E	C	F	.	.	.	.	.	.	Y	L	D	E	F	S	N	I	S	E	L	K	D	A	V	T	E	Y	I	E	Y	Y	N	S	R	R	I	S	L	K	L	K	G	L	T	P
Query Conservation																																								.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.																								.	.
Template Conservation																																																																					.	.
Template Sequence		T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	.	.	H	K	E	R	G	E	N	T	K	T	P
Template Known Secondary structure										T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														.	.	S	S			S	S		S	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.
		272	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		209	210

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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