Job Description Q47538 Confidence 100.00% Date Thu Jan 5 12:36:53 GMT 2012 Rank 26 Aligned Residues 213 % Identity 31% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		2	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.
Predicted Secondary structure												.	.	.																																																									.	.	.	.	.
Query SS confidence												.	.	.																																																									.	.	.	.	.
Query Sequence		L	Q	I	S	H	L	Y	A	D	Y	.	.	.	G	G	K	P	A	L	E	D	I	N	L	T	L	E	S	G	E	L	L	V	V	L	G	P	S	G	C	G	K	T	T	L	L	N	L	I	A	G	F	V	P	Y	Q	H	G	S	I	Q	L	A	G	K	R	I	E	G	.	.	.	.	.	P	G	A	E	R	G
Query Conservation												.	.	.																																																									.	.	.	.	.
Alig confidence												.	.	.																																																									.	.	.	.	.
Template Conservation
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A	Q	L	G
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		V	V	F	Q	N	E	G	L	L	P	W	R	N	V	Q	D	N	V	A	F	G	L	Q	L	A	G	I	E	K	M	Q	R	L	E	I	A	H	Q	M	L	K	K	V	.	.	.	.	.	.	.	G	L	E	G	A	E	K	R	Y	I	W	Q	L	S	G	G	Q	R	Q	R	V	G	I	A	R	A	L	A	A	N
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence													.																																.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q
Template Known Secondary structure					S	S					S	S	.	B						T				S	S																T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure													.
Template SS confidence
		1111	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	L	L	L	L	D	E	P	F	G	A	L	D	A	F	T	R	D	Q	M	Q	T	L	L	L	K	L	W	Q	E	T	G	K	Q	V	L	L	I	T	H	D	I	E	E	A	V	F	M	A	T	E	L	V	L	L	S	S	G	P	G	R	V	L	E	R	L	P	L	N	F	A	R	R
Query Conservation
Alig confidence																																.	.																.												.	.
Template Conservation																																.	.																.												.	.
Template Sequence		P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	.	N	A	D	L	I	V	V	I	Q	N	G	.	.	K	V	K	E	H	G	T	H	Q	Q	L	L	A
Template Known Secondary structure			S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	.	S		S							T	B	.	.
Template Predicted Secondary structure																																.	.																.												.	.
Template SS confidence
		1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.		.	.	.	.	.	1240	.	.	.	.	.			.	.	.	.	1250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions