Job Description Q47538 Confidence 100.00% Date Thu Jan 5 12:36:53 GMT 2012 Rank 52 Aligned Residues 213 % Identity 30% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.
Predicted Secondary structure												.	.																																																													.	.	.	.	.
Query SS confidence												.	.																																																													.	.	.	.	.
Query Sequence		L	Q	I	S	H	L	Y	A	D	Y	.	.	G	G	K	P	A	L	E	D	I	N	L	T	L	E	S	G	E	L	L	V	V	L	G	P	S	G	C	G	K	T	T	L	L	N	L	I	A	G	F	V	P	Y	Q	H	G	S	I	Q	L	A	G	K	R	I	E	G	P	G	A	E	.	.	.	.	.	R	G	V
Query Conservation												.	.																																																													.	.	.	.	.
Alig confidence												.	.																																																													.	.	.	.	.
Template Conservation
Template Sequence		V	E	F	R	N	V	T	F	T	Y	P	G	R	D	V	P	A	L	R	N	I	N	L	K	I	P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S	L	R	N	Q	V	A	L
Template Known Secondary structure					S	S		B		B		S	S	S	S		B	S	S		S							T	T							S	S	T	T	S	S								T	T	T		S			B	S	S					S	S	S	B	T	T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		V	F	Q	N	E	G	L	L	P	W	R	N	V	Q	D	N	V	A	F	G	L	Q	L	A	G	I	E	K	M	Q	R	L	E	I	A	H	Q	M	L	K	K	V	.	.	.	.	.	.	G	L	E	G	A	E	K	R	Y	I	W	Q	L	S	G	G	Q	R	Q	R	V	G	I	A	R	A	L	A	A	N	P	Q
Query Conservation																																												.	.	.	.	.	.
Alig confidence												.																																.	.	.	.	.	.
Template Conservation												.
Template Sequence		V	S	Q	N	V	H	L	F	N	D	.	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y	S	R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L	L	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	L	R	D	S	P
Template Known Secondary structure				S						S	S	.		B	S	T	T	T	T	S	S	S	S	T	T	S			T	T					T	T	T	T	S	T					T	T	S	S	S	S	S	B					T	T	S		S	S										T					T	S			S
Template Predicted Secondary structure												.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	L	D	E	P	F	G	A	L	D	A	F	T	R	D	Q	M	Q	T	L	L	L	K	L	W	Q	E	T	G	K	Q	V	L	L	I	T	H	D	I	E	E	A	V	F	M	A	T	E	L	V	L	L	S	S	G	P	G	R	V	L	E	R	L	P	L	N	F	A	R	R
Query Conservation
Alig confidence																														.	.															.													.	.
Template Conservation																														.	.															.													.	.
Template Sequence		I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	R	T	S	L	V	I	A	H	R	L	S	T	I	.	E	K	A	D	E	I	V	V	V	E	D	G	.	.	V	I	V	E	R	G	T	H	N	D	L	L	E
Template Known Secondary structure								T	T	S	S									T	T					T	T	T	S	.	.	S	S							S	S	G	G	G	T	.	T	T		S	S	B					T	T	.	.							S	S	S
Template Predicted Secondary structure																														.	.															.													.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.		.	.	.	.	.	.	.	550	.	.	.	.			.	.	.	.	.	560	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions