Job Description Q47538 Confidence 100.00% Date Thu Jan 5 12:36:53 GMT 2012 Rank 2 Aligned Residues 232 % Identity 33% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		M	L	Q	I	S	H	L	Y	A	D	Y	G	G	K	P	A	L	E	D	I	N	L	T	L	E	S	G	E	L	L	V	V	L	G	P	S	G	C	G	K	T	T	L	L	N	L	I	A	G	F	V	P	Y	Q	H	G	S	I	Q	L	A	G	K	R	I	E	G	.	.	.	P	G	A	E	R	G	V	V	F	Q
Query Conservation																																																																					.	.	.
Alig confidence																																																																					.	.	.
Template Conservation
Template Sequence		S	I	R	V	V	N	L	K	K	Y	F	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P	K	Y	R	E	V	G	M	V	F	Q
Template Known Secondary structure													T	T													T	T								S	T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T						S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	G	L	L	P	W	R	N	V	Q	D	N	V	A	F	G	L	Q	L	A	G	I	E	K	M	Q	R	L	E	I	A	H	Q	M	L	K	K	V	G	L	E	G	A	E	K	R	Y	I	W	Q	L	S	G	G	Q	R	Q	R	V	G	I	A	R	A	L	A	A	N	P	Q	L	L	L	L	D	E	P	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Y	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	R	R	I	S	K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	I	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	Q	P	K	V	L	L	F	D	E	P	L	S
Template Known Secondary structure		S					T	T	S								G	G	G	S	S	S		S					T	T										T	T		G	G	G	T	T	S		G	G	G	S															T	T			S						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	A	F	T	R	D	Q	M	Q	T	L	L	L	K	L	W	Q	E	T	G	K	Q	V	L	L	I	T	H	D	I	E	E	A	V	F	M	A	T	E	L	V	L	L	S	S	G	P	G	R	V	L	E	R	L	P	L	N	F	A	R	R	F	V	A	G	E	S	S	R	S	I	K	S	D	P
Query Conservation
Alig confidence																																																		.	.
Template Conservation																																																		.	.
Template Sequence		N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E	L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	I	A	V	F	N	Q	G	.	.	K	L	V	Q	Y	G	T	P	D	E	V	Y	D	S	P	K	N	M	F	V	A	S	F	I	G	N	P
Template Known Secondary structure		T	S																												S										S							T	T	.	.														S		S	B							S	S	S	S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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