Job Description P46853 Confidence 100.00% Date Wed Jan 25 15:20:56 GMT 2012 Rank 24 Aligned Residues 332 % Identity 17% Template c3v5nA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																	.																				.	.								.	.	.	.	.
Query SS confidence																																	.																				.	.								.	.	.	.	.
Query Sequence		V	I	N	C	A	F	I	G	F	G	K	S	T	T	R	Y	H	L	P	Y	V	L	N	R	K	D	S	W	H	V	A	.	H	I	F	R	R	H	A	K	P	E	E	Q	A	P	I	Y	S	H	I	.	.	H	F	T	S	D	L	D	.	.	.	.	.	E	V	L	N	D	P	D	V	K	L	V	V	V	C	T
Query Conservation																																	.																				.	.								.	.	.	.	.
Alig confidence																																	.																				.	.								.	.	.	.	.
Template Conservation
Template Sequence		R	I	R	L	G	X	V	G	G	G	A	F	I	G	A	V	H	R	I	A	A	R	L	D	D	H	Y	E	L	V	A	G	A	L	S	S	T	P	E	K	A	E	A	S	G	R	E	L	G	L	D	P	S	R	V	Y	S	D	F	K	E	X	A	I	R	E	A	K	L	K	N	G	I	E	A	V	A	I	V	T
Template Known Secondary structure									S																T	S											S	S												T			G	G	G	B		S													T	T			S						S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	D	S	H	F	E	Y	A	K	R	A	L	E	A	G	K	N	V	L	V	E	K	P	F	T	P	T	L	A	Q	A	K	E	L	F	A	L	A	K	S	K	G	L	T	V	T	P	Y	Q	N	R	R	F	D	S	C	F	L	T	A	K	K	A	I	E	S	G	K	L	G	E	I	V	E	V	E	S	H	F
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		P	N	H	V	H	Y	A	A	A	K	E	F	L	K	R	G	I	H	V	I	C	D	K	P	L	T	S	T	L	A	D	A	K	K	L	K	K	A	A	D	E	S	D	A	L	F	V	L	T	H	N	Y	T	G	Y	P	X	V	R	Q	A	R	E	X	I	E	N	G	D	I	G	A	V	R	L	V	Q	X	E	.
Template Known Secondary structure			T	T	S										T	T	T							S	S	S		S	S															S	S							G	G	G	G	S												T	T	T	T		S								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																														.	.	.	.	.
Query SS confidence																																					.																														.	.	.	.	.
Query Sequence		D	Y	Y	R	P	V	A	E	T	K	P	G	L	P	Q	D	G	A	F	Y	G	L	G	V	H	T	M	D	Q	I	I	S	L	F	G	.	R	P	D	H	V	A	Y	D	I	R	S	L	R	N	K	A	N	P	D	D	T	F	E	A	Q	L	F	Y	G	.	.	.	.	.	D	L	K	A	I	V	K	T	S	H
Query Conservation																																					.																														.	.	.	.	.
Alig confidence		.	.	.	.	.	.																														.																														.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Y	P	Q	D	W	L	T	E	N	G	G	S	T	G	D	I	G	T	H	A	Y	N	L	G	C	F	V	S	G	L	E	L	E	E	L	A	A	D	L	D	S	F	V	G	G	R	Q	L	D	D	N	A	H	V	L	X	R	F	R	E	K	D	G	T	R	A	K	G	X	L	W	C	S	Q
Template Known Secondary structure		.	.	.	.	.	.					T	T	S									T																											S	T	T			S													B	T	T	B										S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		L	V	K	I	D	Y	P	K	.	.	F	I	V	H	G	K	K	G	S	F	I	K	Y	G	I	D	Q	Q	E	T	S	L	K	A	N	I	M	P	G	E	P	G	F	A	A	D	D	S	V	G	V	L	E	Y	V	N	D	E	G	V	T	V	R	E	E	M	K	P	E	M	G	D	Y	G	R	V	Y	D	A	L
Query Conservation										.	.
Alig confidence										.	.																																																						.	.
Template Conservation																																																																	.	.
Template Sequence		V	A	P	G	H	E	N	G	L	X	V	R	V	Y	G	T	K	G	G	L	E	W	T	Q	K	D	P	N	Y	L	W	Y	T	P	F	G	E	P	K	R	L	L	T	R	A	G	A	G	A	S	P	A	A	A	R	V	S	R	I	P	S	G	H	.	.	P	E	G	Y	L	E	G	F	A	N	I	Y	S	E	A
Template Known Secondary structure				T	T		S	S									S	S							T	T	S	T	T							T	T	S							T	T	S	T	T							T	T			S		T	T	S	.	.
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		306	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.
Predicted Secondary structure									.	.	.	.																													.	.
Query SS confidence									.	.	.	.																													.	.
Query Sequence		Y	Q	T	I	T	H	G	.	.	.	.	A	P	N	Y	V	K	E	S	E	V	L	T	N	L	E	I	L	E	R	G	F	E	Q	A	S	P	S	T	.	.	V	T
Query Conservation									.	.	.	.																													.	.
Alig confidence									.	.	.	.																													.	.
Template Conservation
Template Sequence		A	R	A	I	Y	A	K	R	A	D	P	S	V	I	Y	P	T	I	D	D	G	X	R	G	X	T	F	V	D	A	C	V	R	S	S	E	R	N	G	A	W	I	K
Template Known Secondary structure							T	T				T	T																									T	T	S			B
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions