Job Description P46853 Confidence 100.00% Date Wed Jan 25 15:20:56 GMT 2012 Rank 5 Aligned Residues 335 % Identity 20% Template c3oqbF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110 Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.									20	.	.	.	.	.	.	.	.	.	30	.	.										.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		V	I	N	C	A	F	I	G	F	G	K	S	T	T	R	Y	H	L	.	.	.	.	.	.	.	.	P	Y	V	L	N	R	K	D	S	W	H	V	A	.	.	.	.	.	.	.	.	.	H	I	F	R	R	H	A	K	P	E	E	Q	A	P	I	Y	S	H	I	H	F	T	S	D	L	D	E	V	L	N	D	P
Query Conservation																				.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence																	.			.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		T	Q	R	L	G	L	I	X	N	G	V	T	G	R	X	.	G	L	N	Q	H	L	I	R	S	I	V	A	I	R	D	Q	G	G	V	R	L	K	N	G	D	R	I	X	P	D	P	I	L	V	G	R	S	A	E	K	V	E	A	L	A	K	R	F	N	I	A	R	W	T	T	D	L	D	A	A	L	A	D	K
Template Known Secondary structure											S	T	T	S			.				T	T	T	T	T	T								T	S				T	T	S												S													T						S									T
Template Predicted Secondary structure																	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	K	L	V	V	V	C	T	H	A	D	S	H	F	E	Y	A	K	R	A	L	E	A	G	K	N	V	L	V	E	K	P	F	T	P	T	L	A	Q	A	K	E	L	F	A	L	A	K	S	K	G	L	T	V	T	P	Y	Q	N	R	R	F	D	S	C	F	L	T	A	K	K	A	I	E	S	G	K	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	T	X	F	F	D	A	A	T	T	Q	A	R	P	G	L	L	T	Q	A	I	N	A	G	K	H	V	Y	C	E	K	P	I	A	T	N	F	E	E	A	L	E	V	V	K	L	A	N	S	K	G	V	K	H	G	T	V	Q	D	K	L	F	L	P	G	L	K	K	I	A	F	L	R	D	S	G	F	F	G
Template Known Secondary structure		T								S		T	T	T										T	T	T							S		S		S	S															T								G	G	G	G	S												T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.										160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.											200	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	V	E	V	E	S	H	F	D	Y	Y	R	P	V	.	.	.	.	.	.	.	.	.	A	E	T	K	P	G	L	P	Q	D	G	A	F	Y	G	L	G	V	H	T	M	D	Q	I	I	S	L	F	G	R	P	D	H	V	A	Y	D	I	R	S	.	.	.	.	.	.	.	.	.	.	L	R	N	K	A	N
Query Conservation																	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	L	S	V	R	G	E	F	G	Y	W	V	F	E	G	G	W	Q	E	A	Q	R	P	S	W	N	Y	R	D	E	D	G	G	G	I	I	L	D	X	V	C	H	W	R	Y	V	L	D	N	L	F	G	N	V	Q	S	V	V	C	I	G	N	T	D	I	P	E	R	F	D	E	Q	G	K	K	Y	K	A	T
Template Known Secondary structure		S															S	S	S	S			S	S		G	G	G	G		G	G	G	T																			T															S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		206	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure													.																			.	.	.
Query SS confidence													.																			.	.	.
Query Sequence		P	D	D	T	F	E	A	Q	L	F	Y	.	G	D	L	K	A	I	V	K	T	S	H	L	V	K	I	D	Y	P	.	.	.	K	F	I	V	H	G	K	K	G	S	F	I	K	Y	G	I	D	Q	Q	E	T	S	L	K	A	N	I	M	P	G	E	P	G	F	A	A	D	D	S	V	G	V	L	E	Y	V	N
Query Conservation													.																			.	.	.
Alig confidence													.																			.	.	.																																											.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		A	D	D	S	A	Y	A	T	F	Q	L	E	G	G	V	I	A	H	I	N	X	S	W	V	T	R	V	Y	R	D	D	L	V	T	F	Q	V	D	G	T	H	G	S	A	V	A	G	L	S	D	C	X	I	Q	A	R	Q	A	T	P	R	P	V	W	N	P	K	R	L	H	D	F	Y	G	D	.	.	.	.	.
Template Known Secondary structure		S											T	T	T									S	S					S	S	S	S								S	S							S	S							G	G	G														G	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		D	E	G	V	T	V	R	E	E	M	K	P	E	M	G	D	Y	G	R	V	Y	D	A	L	Y	Q	T	I	T	H	G	A	P	N	Y	V	K	E	S	E	V	L	T	N	L	E	I	L	E	R	G	F	E	Q	A	S	P	S	T	.	V	T	L	A	K
Query Conservation																																																													.
Alig confidence		.	.	.																																																									.
Template Conservation		.	.	.
Template Sequence		.	.	.	W	Q	K	L	P	D	N	V	S	Y	D	N	G	F	K	E	Q	W	E	X	F	I	R	H	V	Y	E	D	A	P	Y	K	F	T	L	L	E	G	A	K	G	V	Q	L	A	E	C	A	L	K	S	W	K	E	R	R	W	I	D	V	A	P
Template Known Secondary structure		.	.	.								S																										S																					T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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