Job Description P46853 Confidence 100.00% Date Wed Jan 25 15:20:56 GMT 2012 Rank 7 Aligned Residues 341 % Identity 20% Template c3moiA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50 Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	I	N	C	A	F	I	G	F	G	K	S	T	T	R	Y	H	L	P	Y	V	L	N	R	K	D	S	W	H	V	A	H	I	F	R	R	H	A	K	P	E	E	Q	A	P	I	Y	S	H	I	H	F	T	S	D	L	D	E	V	L	N	D	P	D	V	K	L	V	V	V	C	T	H	A	D	S	H	F	E
Query Conservation
Alig confidence																																																					.
Template Conservation																																																					.
Template Sequence		M	K	I	R	F	G	I	C	G	L	G	F	A	G	S	V	L	M	A	P	A	M	R	H	H	P	D	A	Q	I	V	A	A	C	D	P	N	E	D	V	R	E	R	F	G	K	E	Y	G	I	P	.	V	F	A	T	L	A	E	M	M	Q	H	V	Q	M	D	A	V	Y	I	A	S	P	H	Q	F	H	C	E
Template Known Secondary structure												S					T	T									T	T									S													T			.			S	S								S			S						S		G	G	G
Template Predicted Secondary structure																																																					.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		Y	A	K	R	A	L	E	A	G	K	N	V	L	V	E	K	P	F	T	P	T	L	A	Q	A	K	E	L	F	A	L	A	K	S	K	G	L	T	V	T	P	Y	Q	N	R	R	F	D	S	C	F	L	T	A	K	K	A	I	E	S	G	K	L	G	E	I	V	E	V	E	S	H	F	D	Y	.	.	.	.	Y
Query Conservation																																																																													.	.	.	.
Alig confidence																																																																													.	.	.	.
Template Conservation
Template Sequence		H	V	V	Q	A	S	E	Q	G	L	H	I	I	V	E	K	P	L	T	L	S	R	D	E	A	D	R	M	I	E	A	V	E	R	A	G	V	H	L	V	V	G	T	S	R	S	H	D	P	V	V	R	T	L	R	A	I	V	Q	E	G	S	V	G	R	V	S	M	L	N	C	F	N	Y	T	D	F	L	Y	R
Template Known Secondary structure									T	T							S				S																T									G	G	G	S														T	T														G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																		.																													.
Query SS confidence																																		.																													.
Query Sequence		R	P	V	A	E	T	K	P	G	L	P	Q	D	G	A	F	Y	G	L	G	V	H	T	M	D	Q	I	I	S	L	F	G	.	R	P	D	H	V	A	Y	D	I	R	S	L	R	N	K	A	N	P	D	D	T	F	E	A	Q	L	F	Y	.	G	D	L	K	A	I	V	K	T	S	H	L	V	K	I	D	Y	P
Query Conservation																																		.																													.
Alig confidence																																		.																													.
Template Conservation
Template Sequence		P	R	R	P	E	E	L	D	T	S	K	G	G	G	I	I	Y	N	Q	L	P	H	Q	I	D	S	I	K	T	I	T	G	Q	R	I	T	A	V	R	A	M	T	G	R	L	D	P	K	R	P	T	E	G	N	C	A	A	M	L	T	L	E	D	G	A	C	A	V	M	V	Y	S	G	Y	D	H	F	D	S	D
Template Known Secondary structure					G	G	G	G		G	G	G	T		S					T																												T	T	S		S											T	T	S										S	S	S	S		G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250																																	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	F	I	V	H	G	K	K	G	S	F	I	K	Y	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	Q	E	T	S	L	K	A	N	I	M	P	G	E	P	G	F	A	A	D	D	S	V	G	V	L	E	Y	V	N	D
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	M	H	F	W	L	A	E	G	G	R	A	K	Q	P	N	H	G	G	A	R	K	V	L	R	Q	L	E	G	D	E	A	E	L	R	R	S	R	Y	G	F	G	G	P	I	S	K	S	D	R	K	Q	P	H	F	G	V	M	L	V	T	C	E	H	A	D	L	R	A	S	P	E	G	V	L	V	Y	G	D	E
Template Known Secondary structure		G	G	T	T	T	B		T	T	S	S	B					S	S											S											S	T	T	S	T	T											S							S	S							S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		E	G	V	T	V	R	E	E	M	K	P	E	M	G	D	Y	G	R	V	Y	D	A	L	Y	Q	T	I	T	H	G	A	P	N	Y	V	K	E	S	E	V	L	T	N	L	E	I	L	E	R	G	F	E	Q	A	S	P	S	T	.	V	T
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		G	V	R	E	V	P	A	I	T	G	R	G	P	F	S	Q	G	D	T	I	D	E	L	R	D	A	I	A	G	V	A	P	A	L	R	D	A	R	W	G	K	D	T	L	E	V	C	L	A	V	L	E	S	S	A	T	G	R	Q	V	E
Template Known Secondary structure												S	S	S	T														T	T	S	S			S	S																						S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions