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Job DescriptionP46853
Confidence100.00%DateWed Jan 25 15:20:56 GMT 2012
Rank29Aligned Residues327
% Identity16%Templatec3m2tA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY
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Template Sequence  LIKVGLVGIGAQXQENLLPSLLQXQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAXLNQVPLDAVVXAGPPQLHFEX
Template Known Secondary structure 


STT
TT
SSGGGGGTS
S

SSS

S
S
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   82.......90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  AKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA.
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Template Sequence  GLLAXSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGXNFKFARPVRQLREXTQVDEFGETLHIQLNHYANKPRAP
Template Known Secondary structure  TT

S
S
SST




TSGGG





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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   161........170.........180........ .190.........200.........210...... ...220.........230........
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Query Sequence  ETKPGLPQDGAFYGLGVHTMDQIISLFG. RPDHVAYDIRSLRNKANPDDTFEAQLFY. GDLKAIVKTSHLVKIDYPKFIV
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Template Sequence  LWGLDSTLRSFLLAQAIHTIDLAITFGDGELRRVQSSVQRH. . . . DDALIVRADXAFSSGATASLLAGTSFPYFEFDXKL
Template Known Secondary structure 
TT
S
T
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   163......170.........180.........190.........200... ......210.........220.........230........
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  HGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAPNYVK
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Template Sequence  VSSSSTLVELDNLWNITLHEPEHATRPTGAAKRWRGAW. . . . . . . . QPGPLDSGYERSGYHGELHQFFQAIREHRRFEAD
Template Known Secondary structure  TTS
TTT
TT

BTTTBS
TT

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TT

SSTTTSTT


TTS
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   239240.........250.........260.........270...... ...280.........290.........300.........310
 
   319320.........330.........340
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Query Sequence  ESEVLTNLEILERGFEQASPST
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Template Sequence  FASLLPTYRVIEEICSADAVAQ
Template Known Secondary structure  TGGG
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   311........320.........330..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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