Job Description P46853 Confidence 97.29% Date Wed Jan 25 15:20:56 GMT 2012 Rank 221 Aligned Residues 124 % Identity 18% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.																					.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	N	C	A	F	I	G	F	G	K	S	T	T	R	Y	H	L	P	Y	V	L	N	R	K	D	S	W	H	V	A	H	I	F	R	R	H	A	.	.	.	.	K	P	E	E	Q	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	S	H	I	H	F	T	S	D	L
Query Conservation																																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																						.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	.	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P	D	F
Template Known Secondary structure											S	T	T					.							S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T						S		G
Template Predicted Secondary structure																		.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	V	L	N	D	P	D	V	K	L	V	V	V	C	T	H	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	H	F	E	Y	A	K	R	A	L	E	A	G	K	N	V	L	V	E	K	P	F	T	P	T	L	A	Q	A	K	E	L	F	A	L	A	K	S	K	G	L	T	V	T	P	Y
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.
Template Sequence		S	R	I	.	.	.	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	K	A	G	E	D
Template Known Secondary structure		G	G	G	.	.	.	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T														B	T	T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		97	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		123	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	R	R	F	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	L	A	H	A	P
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions