Job Description P46853 Confidence 100.00% Date Wed Jan 25 15:20:56 GMT 2012 Rank 30 Aligned Residues 328 % Identity 19% Template c3btuD_ PDB info PDB header:transcription Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k] Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure											.	.	.																.																											.	.
Query SS confidence											.	.	.																.																											.	.
Query Sequence		V	I	N	C	A	F	I	G	F	.	.	.	G	K	S	T	T	R	Y	H	L	P	Y	V	L	N	R	.	K	D	S	W	H	V	A	H	I	F	R	R	H	A	K	P	E	E	Q	A	P	I	Y	S	H	I	.	.	H	F	T	S	D	L	D	E	V	L	N	D	P	D	V	K	L	V	V	V	C	T	H	A
Query Conservation											.	.	.																.																											.	.
Alig confidence											.	.	.																.																											.	.
Template Conservation
Template Sequence		P	I	R	V	G	F	V	G	L	N	A	A	K	G	W	A	I	K	T	H	Y	P	A	I	L	Q	L	S	S	Q	F	Q	I	T	A	L	Y	S	P	K	I	E	T	S	I	A	T	I	Q	R	L	K	L	S	N	A	T	A	F	P	T	L	E	S	F	A	S	S	S	T	I	D	M	I	V	I	A	I	Q	V
Template Known Secondary structure									S			S	S	S	S	S	G	G	G	T								T	T	T	T									S	S											T	T		T	T					S	S								S	S		S						S		G
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		D	S	H	F	E	Y	A	K	R	A	L	E	A	G	.	.	.	.	.	.	K	N	V	L	V	E	K	P	F	T	P	T	L	A	Q	A	K	E	L	F	A	L	A	K	S	K	G	L	T	V	T	P	Y	Q	N	R	R	F	D	S	C	F	L	T	A	K	K	A	I	E	S	G	K	L	G	E	I	V	E	V
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	H	Y	E	V	V	M	P	L	L	E	F	S	K	N	N	P	N	L	K	Y	L	F	V	E	W	A	L	A	C	S	L	D	Q	A	E	S	I	Y	K	A	A	A	E	R	G	V	Q	T	I	I	S	L	Q	G	R	K	S	P	Y	I	L	R	A	K	E	L	I	S	Q	G	Y	I	G	D	I	N	S	I
Template Known Secondary structure		G	G												G	G	G		T	T								S	S			S	S															T								G	G	G	G													T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.																	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	H	F	D	Y	Y	.	.	.	.	.	.	.	.	R	P	V	A	E	T	K	P	G	L	P	Q	D	G	A	F	Y	G	L	G	V	H	T	M	D	Q	I	I	S	L	F	G	.	R	P	D	H	V	A	Y	D	I	R	S	L	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A
Query Conservation									.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																																	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	A	G	N	G	G	W	Y	G	Y	E	R	P	V	K	S	P	K	Y	I	Y	E	I	G	N	G	V	D	L	V	T	T	T	F	G	H	T	I	D	I	L	Q	Y	M	T	S	S	Y	F	S	R	I	N	A	M	V	F	N	N	I	P	E	Q	E	L	I	D	E	R	G	N	R	L	G	Q	R	V	P	K
Template Known Secondary structure								S	S		S	S				T	T	S		G	G	G	G	S	T	T	S	S		S	T	T	T	T														T															S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		N	P	D	D	T	F	E	A	Q	L	F	Y	G	D	L	K	A	I	V	K	T	S	H	L	V	.	.	.	.	.	.	K	I	D	Y	P	K	F	I	V	H	G	K	K	G	S	F	I	K	Y	G	I	D	Q	Q	E	T	S	L	K	A	N	I	M	P	G	E	P	G	F	A	A	D	D	S	V	G	V	L	E
Query Conservation																											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	P	D	H	L	L	F	Q	G	T	L	L	N	G	N	V	P	V	S	C	S	F	K	G	G	K	P	T	K	K	F	T	K	N	L	V	I	D	I	H	G	T	K	G	D	L	K	L	E	G	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	E	I	S	N	L	V	L	Y
Template Known Secondary structure			S		S									T	T	T	T										S	S	S			S	S	S		S								S	S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																	.	.	.	.	.	.	.	.	.	320
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.														.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		Y	V	N	D	E	G	V	T	V	R	E	E	M	K	P	E	M	G	D	Y	G	R	V	Y	D	A	L	Y	Q	T	I	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	P	N	Y	V	K	E	S	E	V	L	T	N	L	E	I	L	E	R	G	F	E	Q	A	S	P	S	T	.	V	T	L	A
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence		Y	S	G	T	R	K	E	I	M	K	V	Y	H	L	R	N	Y	N	A	I	V	G	N	I	H	R	L	Y	Q	S	I	S	D	F	H	F	N	T	S	Q	F	V	M	Q	G	F	D	F	E	G	F	P	T	L	M	D	A	L	I	L	H	R	L	I	E	S	V	Y	K	S	N	M	M	G	S	T	L	N	V	S
Template Known Secondary structure																T	T																				T	T					S			T	T		S	S	S																								T	S					G
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		345
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		429

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions