Job Description P46853 Confidence 98.13% Date Wed Jan 25 15:20:56 GMT 2012 Rank 132 Aligned Residues 126 % Identity 11% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		1	.	.				.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		M	V	I	.	.	.	N	C	A	F	I	G	F	G	K	S	T	T	R	Y	H	L	P	Y	V	L	N	R	K	D	S	W	H	V	A	H	I	F	R	R	H	A	K	P	E	E	Q	A	P	I	Y	S	H	I	H	F	T	S	D	L	D	E	V	L	N	D	P	D	V	K	L	V	V	V	C	T	H	A	D	S
Query Conservation					.	.	.
Alig confidence					.	.	.															.								.	.																					.	.															.	.
Template Conservation																						.								.	.																					.	.															.	.
Template Sequence		I	T	P	T	D	K	K	I	G	F	L	G	L	G	L	M	G	S	G	I	.	V	S	N	L	L	K	M	.	.	G	H	T	V	T	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	E	.	.	G	A	R	L	G	R	T	P	A	E	V	V	S	T	.	.	C	D	I	T	F	A	C	V	S	D	P	K
Template Known Secondary structure						S	S								S							.							T	.	.	T								S	S	G	G	G	G						T	.	.	T					S									.	.		S							S	S
Template Predicted Secondary structure																						.								.	.																					.	.															.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		H	F	E	Y	A	K	R	A	L	E	A	G	K	N	V	L	V	E	K	P	F	T	P	.	.	.	.	.	T	L	A	Q	A	K	E	L	F	A	L	A	K	S	K	G	L	T	V	T	P	Y	Q	N	R	R	F	D	S	C	F	L	T
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	D	L	V	L	G	P	S	G	V	L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	F	L	E	A	P	V	S	G	N	Q	Q	L	S	N	D
Template Known Secondary structure									S	T	T		G	G	G	G			T	T							S																	T	T										S
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions