 |
Job Description | P46853 | Confidence | 96.14% | Date | Wed Jan 25 15:20:56 GMT 2012 |
Rank | 346 | Aligned Residues | 67 |
% Identity | 18% | Template | c2hjrK_ |
PDB info |
PDB header:oxidoreductase | Chain: K: PDB Molecule:malate dehydrogenase; |
PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase
|
Resolution | 2.20 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | V | I | N | C | A | F | I | G | F | G | K | S | T | T | R | Y | H | L | P | Y | V | L | N | R | K | D | S | W | H | V | A | H | I | F | R | R | H | A | K | P | E | E | Q | A | P | I | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | H | I | H | F | T | S | D | L | D | E | V | L | N | D | P | D | V | K | L | V | V |
Query Conservation |   |
|   |
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   | . |
|   |   |
|   |   |   | . |   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|
| . | . | . |   |   |
|
|
|
|
|
Template Sequence |   |
M | R | K | K | I | S | I | I | G | A | G | Q | I | G | S | T | I | . |
A | L | L | L | G | Q | K | . |
D | L | G | D | V | Y | M | F | D | I | I | E | G | V | P | Q | G | K | A | L | D | L | N | H | C | M | A | L | I | G | S | P | A | K | I | F | G | E | N | N | Y | E | Y | L | . |
. |
. |
Q | N | S | D | V | V | I |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  | . |  |  |  |  |  |  | T | . | T |
| S |  |  |  |  |  |
| S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|  |  |  |  | S |
| G | G | G | G | . | . | . | T | T |
| S |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  | . |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  | . | . | . |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
30 | . | . | . | . | . | . | |
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
|
|
. | . | . | . | . | . | . |
  |
  |   |
71 | . |
Predicted Secondary structure |   |
 |
|
Query SS confidence |   |
|
|
Query Sequence |   |
V | C |
Query Conservation |   |
|   |
Alig confidence |   |
|
|
Template Conservation |   |
|   |
Template Sequence |   |
I | T |
Template Known Secondary structure |   |
 |
|
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
88 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|