 |
Job Description | P36645 | Confidence | 97.52% | Date | Thu Jan 5 11:53:22 GMT 2012 |
Rank | 33 | Aligned Residues | 91 |
% Identity | 18% | Template | c3eihB_ |
PDB info |
PDB header:protein transport | Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; |
PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas
|
Resolution | 3.25 Å |
|
 |
  |   |
193 | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | V | N | T | L | G | M | Q | P | L | Q | L | A | D | F | A | H | A | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | Q | P | Q | G | L | V | L | V | T | G | P | T | G | S | G | K | T | V | T | L | Y | S | A | L | Q | K | L | N | T | A | D | I | N | I | C | S | V | E | D | P | V | E | I | P | I | A | G |
Query Conservation |   |
  |
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |
|
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
| . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |
Template Sequence |   |
K | W | E | D | V | A | G | L | E | G | A | K | E | A | L | K | E | A | V | I | L | P | V | K | F | P | H | L | F | K | G | N | R | K | P | T | S | G | I | L | L | Y | G | P | P | G | T | G | K | S | Y | L | A | K | A | V | A | T | E | A | . |
. |
. |
N | S | T | F | F | S | V | S | S | S | D | L | V | S | K | . |
. |
Template Known Secondary structure |   |
| S | T | T | S |
| S |
|  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |
| G | G | G |
|
| T | T |
|
|
|
|
|  |  |  |  |  |
| S | T | T | S |
|  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | T |
|  |  |  |  |  |  |  |  |  |  | T | T | T | . | . |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
| . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
  |
  |   |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | N | Q | T | Q | I | H | P | R | A | G | L | T | F | Q | G | V | L | R | A | L | L | R | Q | D | P | D | V | I | M | I | G | E | I |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |   |
|   |
|   |   |   |   |
|
|   |   |
|
|   |
|
|
|
|
|   |
|
|
|
|
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
W | M | G | E | S | E | K | L | V | K | Q | L | F | A | M | A | R | E | N | K | P | S | I | I | F | I | D | Q | V |
Template Known Secondary structure |   |
. | . | . | . | . | S | S | S | S |
| T | T | T |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  | S | G |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|