Job Description P36645 Confidence 100.00% Date Thu Jan 5 11:53:22 GMT 2012 Rank 4 Aligned Residues 413 % Identity 20% Template c2oaq1_ PDB info PDB header:hydrolase Chain: 1: PDB Molecule:type ii secretion system protein; PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate Resolution 3.15 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.															.	.
Query SS confidence																						.															.	.
Query Sequence		Y	H	G	V	L	L	D	A	S	E	E	V	V	H	V	A	V	V	D	A	.	P	S	H	E	L	L	D	A	L	H	F	A	T	T	.	.	K	R	I	E	I	T	C	W	T	R	Q	Q	M	E	G	H	A	S	R	T	Q	Q	T	L	P	V	A	V	Q	E	K	H	Q	P	K	A	E	L	L	T	R	T	L
Query Conservation																						.															.	.
Alig confidence																						.															.	.																																	.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		K	A	I	I	V	E	N	E	D	E	F	R	N	V	Y	Y	A	L	E	P	T	V	S	S	E	E	A	E	V	I	S	A	L	Y	D	D	L	K	K	I	L	V	L	Q	D	V	S	V	D	L	E	E	R	A	E	V	L	V	R	A	I	E	K	T	D	N	F	Y	S	.	.	.	.	R	X	L	Y	Y	L	F
Template Known Secondary structure									S	S	S																												T	T							T	T	S																	T	T	T	T		.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.
		90	.	.	.	.	.	.											.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	A	L	E	Q	R	.	.	.	.	.	.	.	.	.	.	A	S	D	I	H	I	E	P	A	D	N	A	Y	R	I	R	L	R	I	D	G	V	L	H	P	L	P	D	V	S	P	D	A	G	V	A	L	T	A	R	L	K	V	L	G	N	L	D	I	A	E	H	R	L	P	Q	D	G	Q	F	T	V	E
Query Conservation									.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																																														.	.
Template Conservation																																																																																.	.
Template Sequence		R	D	F	F	G	Y	G	L	I	D	P	L	X	E	D	T	N	V	E	D	I	S	C	D	G	Y	N	I	P	I	F	I	Y	H	Q	K	Y	G	N	V	E	T	N	I	V	L	D	Q	E	K	L	D	R	X	V	L	R	L	T	Q	R	S	G	K	H	I	S	I	A	N	P	I	V	D	A	T	L	P	.	.
Template Known Secondary structure			T	T	T	S		G	G	G							T	T								S	T	T								T	T	T						S																			T	T				B	T	T	B								T	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		L	A	G	N	A	V	S	F	R	I	A	T	L	P	C	R	G	G	E	K	V	V	L	R	L	L	Q	Q	V	G	.	Q	A	L	D	V	N	T	L	G	M	Q	P	L	Q	L	A	D	F	A	H	A	L	Q	Q	P	Q	G	L	V	L	V	T	G	P	T	G	S	G	K	T	V	T	L	Y	S	A	L	Q	K
Query Conservation																																.
Alig confidence		.																														.
Template Conservation		.
Template Sequence		.	D	G	S	R	L	Q	A	T	F	G	T	E	V	T	P	R	G	S	S	F	T	I	R	K	F	T	I	E	P	L	T	P	I	D	L	I	E	K	G	T	V	P	S	G	V	L	A	Y	L	W	L	A	I	E	H	K	F	S	A	I	V	V	G	E	T	A	S	G	K	T	T	T	L	N	A	I	X	X	F
Template Known Secondary structure		.	T	T								S	S	S	S		T	T		S																				T	T	S	S														T	T								S	T	T	S	S									G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		L	N	T	A	D	I	N	I	C	S	V	E	D	P	V	E	I	P	I	A	G	L	N	Q	T	Q	I	H	P	R	A	G	.	.	.	.	.	L	T	F	Q	G	V	L	R	A	L	L	R	Q	D	P	D	V	I	M	I	G	E	I	R	D	G	E	T	A	E	I	A	I	K	A	A	Q	T	G	H	L	V	L
Query Conservation																																		.	.	.	.	.
Alig confidence				.																														.	.	.	.	.																												.
Template Conservation				.																																																														.
Template Sequence		I	P	.	P	D	A	K	V	V	S	I	E	D	T	R	E	I	K	L	Y	H	E	N	W	I	A	E	V	T	R	T	G	X	G	E	G	E	I	D	X	Y	D	L	L	R	A	A	L	R	Q	R	P	D	Y	I	I	V	G	E	V	R	G	R	E	.	A	Q	T	L	F	Q	A	X	S	T	G	H	A	S	Y
Template Known Secondary structure		S		.	T	T	S							S	S								S	S							B			S	S	S			B								T	T	S	S	S			S					S				S	T		.										T	T
Template Predicted Secondary structure				.																																																														.
Template SS confidence
		284	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.
Predicted Secondary structure																							.																																																								.
Query SS confidence																							.																																																								.
Query Sequence		S	T	L	H	T	N	S	T	C	E	T	L	V	R	L	Q	Q	M	G	V	A	.	R	W	M	L	S	S	A	L	T	L	V	I	A	Q	R	L	V	R	K	L	C	P	H	C	R	R	Q	Q	G	E	P	I	H	I	P	D	N	V	W	P	S	P	L	P	H	W	Q	A	P	G	C	V	H	C	Y	.	H	G
Query Conservation																							.																																																								.
Alig confidence																							.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	L	H	A	G	D	I	N	Q	X	V	Y	R	L	E	S	E	P	L	K	V	P	R	S	X	L	Q	F	L	D	I	A	L	V	Q	T	X	W	V	R	G	N	T	R	L	R	R	T	K	E	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	L	G	I	D	P
Template Known Secondary structure							S	S										S	T	T	T				G	G	G	G	G	G												S	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.																					.	.	.	.	.	420	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430			.	.	.	.	.	.	.	.	.	440								.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																																									.	.											.	.	.	.	.	.	.
Query SS confidence																																									.	.											.	.	.	.	.	.	.
Query Sequence		F	Y	G	R	T	A	L	F	E	V	L	P	I	T	P	V	I	R	Q	L	I	S	A	N	T	D	V	E	S	L	E	T	H	A	R	Q	A	G	M	.	.	R	T	L	F	E	N	G	C	L	A	.	.	.	.	.	.	.	V	E	Q	G	L	T	T	F	E	E	L	I	R	V	L
Query Conservation																																									.	.											.	.	.	.	.	.	.
Alig confidence																														.											.	.											.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		V	D	K	N	L	L	V	N	Q	F	V	K	W	D	P	K	E	D	K	H	I	E	V	S	X	P	K	K	.	L	E	K	X	A	D	F	L	G	V	S	V	Q	E	V	Y	D	E	X	L	S	R	K	R	Y	L	E	L	X	L	K	R	G	I	R	N	Y	K	E	V	T	R	Y	I
Template Known Secondary structure		S	S	S												T	T	T	T						S			T		.									T	S																						T	T
Template Predicted Secondary structure																														.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.