Job Description P36645 Confidence 100.00% Date Thu Jan 5 11:53:22 GMT 2012 Rank 2 Aligned Residues 324 % Identity 34% Template c2gszE_ PDB info PDB header:protein transport Chain: E: PDB Molecule:twitching motility protein pilt; PDBTitle: structure of a. aeolicus pilt with 6 monomers per2 asymmetric unit Resolution 4.20 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		L	T	R	T	L	Q	S	A	L	E	Q	R	A	S	D	I	H	I	E	P	A	D	N	A	Y	R	I	R	L	R	I	D	G	V	L	H	P	L	P	D	V	S	P	D	A	G	V	A	L	T	A	R	L	K	V	L	G	N	L	D	I	A	E	H	R	L	P	Q	D	G	Q	F	T	V	E	L	A	.	G	N
Query Conservation																																																																															.
Alig confidence																									.	.	.																							.																													.
Template Conservation																									.	.	.																							.
Template Sequence		I	L	E	I	I	K	E	A	I	E	L	G	A	S	D	I	H	L	T	A	G	A	P	.	.	.	P	A	V	R	I	D	G	Y	I	K	F	L	K	D	F	P	R	L	T	P	E	D	.	T	Q	K	L	A	Y	S	V	X	S	E	K	H	R	Q	K	L	E	E	N	G	Q	V	D	F	S	F	G	V	R	G
Template Known Secondary structure												T	T		S						S	S	S		.	.	.						T	T						T	T	S	S		S			S	T	.							T	T	S											S	S	B								T	T
Template Predicted Secondary structure																									.	.	.																							.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		A	V	S	F	R	I	A	T	L	P	C	R	G	G	E	K	V	V	L	R	L	L	Q	Q	V	G	Q	A	L	D	V	N	T	L	G	M	Q	P	L	Q	L	A	D	F	A	H	A	L	Q	Q	P	Q	G	L	V	L	V	T	G	P	T	G	S	G	K	T	V	T	L	Y	S	A	L	Q	K	L	N	.	T	A
Query Conservation																																																																															.
Alig confidence																									.	.															.	.	.	.																																			.
Template Conservation																									.	.															.	.	.	.
Template Sequence		V	G	R	F	R	A	N	V	F	Y	Q	R	G	S	V	A	A	A	L	R	S	L	P	.	.	A	E	I	P	E	F	K	K	L	G	L	P	D	K	.	.	.	.	V	L	E	L	C	H	R	K	X	G	L	I	L	V	T	G	P	T	G	S	G	K	S	T	T	I	A	S	X	I	D	Y	I	N	Q	T	K
Template Known Secondary structure		S								B			S	S	S										.	.	S	S				G	G	G	G						.	.	.	.			G	G	G	G		S	S									S	S	S																	S
Template Predicted Secondary structure																									.	.															.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		D	I	N	I	C	S	V	E	D	P	V	E	I	P	I	A	G	L	N	Q	T	Q	I	H	P	R	A	G	.	.	.	L	T	F	Q	G	V	L	R	A	L	L	R	Q	D	P	D	V	I	M	I	G	E	I	R	D	G	E	T	A	E	I	A	I	K	A	A	Q	T	G	H	L	V	L	S	T	L	H	T	N
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		S	Y	H	I	I	T	I	E	D	P	I	E	Y	V	F	K	H	K	K	S	I	V	N	Q	R	E	V	G	E	D	T	K	S	F	A	D	A	L	R	A	A	L	R	E	D	P	D	V	I	F	V	G	E	X	R	D	L	E	T	V	E	T	A	L	R	A	A	E	T	G	H	L	V	F	G	T	L	H	T	N
Template Known Secondary structure										S	S			S					S	S	S							B	T	T	T	B	S										T	T	S			S					S				S												T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.							.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		S	T	C	E	T	L	V	R	L	Q	Q	M	G	V	A	R	.	.	.	.	.	.	W	M	L	S	S	A	L	T	L	V	I	A	Q	R	L	V	R	K	L	C	P	H	C	R	R	Q	Q	G	E	P	I	H	I	P	D	N	V	W	P	S	P	L	P	H	W	Q	A	P	G	C	V	H	C	Y	H	G	F	Y
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	I	D	T	I	H	R	I	V	D	I	F	P	L	N	Q	Q	E	Q	V	R	I	V	L	S	F	I	L	Q	G	I	I	S	Q	R	L	L	P	K	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S								T	G	G	G	S		T	T	T	T																							S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	T	A	L	F	E	V	L	P	I	T	P	V	I	R	Q	L	I	S	A	N	T	D	V	E	S	L	E	T	H	A	R	Q	A	G	M	R	T	L	F	E	N	G	C	L	A	V	E	Q	G	L	T	T	F	E	E	L	I	R	V	L	G	M	P	H
Query Conservation
Alig confidence																									.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		G	R	V	L	A	Y	E	L	L	I	P	N	T	A	I	R	N	L	I	R	E	N	K	.	.	.	.	L	Q	Q	V	Y	S	L	X	Q	X	Q	T	X	N	Q	T	L	Y	K	L	Y	K	Q	G	L	I	T	L	E	D	A	X	E	A	S	P	D	P	K
Template Known Secondary structure		S																				T	T		.	.	.	.							T				B		T	T								T	T	T	S	S		T	T	T						S		S	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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