Job Description Q5H777 Confidence 100.00% Date Wed Jan 25 15:21:15 GMT 2012 Rank 10 Aligned Residues 311 % Identity 22% Template c3o6xC_ PDB info PDB header:ligase Chain: C: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis Resolution 3.50 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.														150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	E	P	R	N	V	L	N	R	L	W	Q	Q	L	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	L	F	P	V	V	A	V	E	L	E	F	Y	L	L	D	R	Q	R	D	A	E	G	Y	L	Q	P	P	C	A	P	G	T	D	D	R	N	T	Q	S	Q	V	Y	S	V	D	N	L	N
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.
Template Sequence		A	L	D	Y	K	T	P	L	L	K	A	L	A	A	V	D	K	A	A	T	E	V	C	Q	L	F	D	K	N	I	T	R	V	F	T	N	L	G	W	E	Q	E	Y	F	L	V	D	T	S	L	Y	N	A	R	P	.	.	.	.	.	.	.	.	.	D	L	R	L	T	G	R	T	L	M	G	H	S	I	P	P
Template Known Secondary structure				B	S																					T	S	S	S					B																				T		T	.	.	.	.	.	.	.	.	.	T					S	S		S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	A	D	V	L	N	D	I	D	E	L	A	Q	L	Q	L	I	P	A	D	G	A	V	A	E	A	S	P	G	Q	F	E	I	N	L	Y	H	T	D	N	V	L	E	A	C	D	D	A	L	A	L	K	R	L	V	R	L	M	A	E	K	H	K	M	H	A	T	F	M	A	K	P	Y	E	E	H	A	G	S
Query Conservation
Alig confidence																																										.
Template Conservation																																										.
Template Sequence		R	V	T	A	F	M	K	E	L	E	I	E	C	H	K	L	G	I	P	V	K	T	R	H	N	E	V	A	P	N	Q	F	E	L	A	P	I	F	E	N	.	C	N	L	A	N	D	H	N	Q	L	V	M	D	L	M	K	R	I	A	R	K	H	H	F	A	V	L	F	H	E	K	P	Y	N	G	V	N	G	S
Template Known Secondary structure																	T	T								B		S	S	T	T											.																						T	T						S	S		S	S	T	T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.																																									.	.	.	.	.
Query Sequence		G	M	H	I	H	I	S	M	Q	N	N	R	G	E	N	V	L	S	D	A	E	G	E	.	.	.	.	.	D	S	P	L	L	K	K	M	L	A	G	M	I	D	L	M	P	S	S	M	A	L	L	A	P	N	V	N	S	Y	R	R	F	Q	P	G	M	Y	V	P	.	.	.	.	.	T	Q	A	S	W	G	H
Query Conservation																									.	.	.	.	.																																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																															.			.							.	.	.	.	.
Template Conservation																																																												.			.
Template Sequence		G	K	H	N	N	W	S	L	C	T	D	T	G	I	N	L	F	A	P	G	K	N	P	K	G	N	M	L	F	L	T	F	L	V	N	V	L	M	M	V	H	K	N	Q	D	L	L	R	A	S	I	M	S	A	G	N	S	H	.	R	L	.	G	A	N	E	A	P	P	A	I	L	S	I	F	L	G	S	Q	L
Template Known Secondary structure		B									B	T	T				S	S				S	S	T	T	T																		T								T							T	.	T	S	.	S	B	T	T	B			S
Template Predicted Secondary structure																																																												.			.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.																	.	.	.	.
Predicted Secondary structure														.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	R	T	V	A	L	R	I	P	C	G	.	.	D	R	H	N	H	R	V	E	Y	R	V	A	G	A	D	A	N	.	.	.	P	Y	L	V	M	A	A	I	F	A	G	I	L	H	G	L	D	N	E	L	P	L	Q	E	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	N	G
Query Conservation														.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	T	L	D	E	I	R	N	R	T	S	P	F	A	F	T	G	N	R	F	E	F	R	A	A	G	S	S	A	N	C	A	A	A	M	I	A	I	N	A	A	M	A	N	Q	L	N	E	F	K	A	S	V	D	K	D	E	A	I	F	R	I	L	K	E	N	I	I	A	S	E	L	I	R	F	E	G	D	G
Template Known Secondary structure							T					S	S	S	S		B		S	S	S				T	T	S	B	S	S	S																								T																		G	G	G				S		T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
		409										410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.						.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		L	.	.	.	.	.	.	.	.	.	E	Q	E	G	L	P	F	P	I	R	Q	S	D	A	L	G	E	F	I	E	N	D	H	L	.	.	.	.	.	R	R	Y	L	G	E	R	F	C	H	V	Y	H	A	C	K	N	D	E	L	L	Q	F
Query Conservation			.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.												.													.	.	.	.	.
Template Conservation																							.
Template Sequence		Y	S	E	E	W	K	Q	E	A	A	R	R	G	L	T	N	I	C	H	V	P	.	E	A	L	M	H	Y	M	D	N	Q	S	R	A	V	L	I	G	E	R	I	F	N	E	T	E	L	A	C	R	L	E	V	E	L	E	K	Y	T	M	K
Template Known Secondary structure		T	S									T	T	T									.					T	T	T	S								T	T	T	T	S
Template Predicted Secondary structure																							.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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