 |
Job Description | Q5H777 | Confidence | 8.89% | Date | Wed Jan 25 15:21:15 GMT 2012 |
Rank | 32 | Aligned Residues | 53 |
% Identity | 6% | Template | c3ns6B_ |
PDB info |
PDB header:translation | Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; |
PDBTitle: crystal structure of hte rna recognition motif of yeast eif3b residues2 76-170
|
Resolution | 1.25 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | N | I | V | E | V | E | N | F | V | Q | Q | S | E | E | R | R | G | S | A | F | T | Q | E | V | K | R | Y | L | E | R | Y | P | N | T | Q | Y | V | D | V | L | L | T | D | L | N | G | C | F | R | G | K | R | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|   |   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |
|
| . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
Template Sequence |   |
D | Q | Y | I | V | V | N | G | A | . |
P | V | I | P | S | A | K | V | P | V | L | K | K | A | L | T | S | L | F | S | K | A | G | K | V | V | N | M | E | F | P | I | D | E | A | T | G | K | T | K | G | F | L | F |
Template Known Secondary structure |   |
G | G |  |  |  |  |  | S |
| . |
|
|
| B | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |
|
|  |  | T | T | T | T |  |  |
| S |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
76 | . | . | . | 80 | . | . | . | . | |
. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|