Job Description Q5H777 Confidence 100.00% Date Wed Jan 25 15:21:15 GMT 2012 Rank 9 Aligned Residues 325 % Identity 20% Template c3fkyD_ PDB info PDB header:ligase Chain: D: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae Resolution 2.95 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																													.				.	.
Query SS confidence																													.				.	.
Query Sequence		T	Q	Y	V	D	V	L	L	T	D	L	N	G	C	F	R	G	K	R	I	P	V	S	S	L	K	K	.	L	E	K	.	.	G	C	Y	F	P	A	S	V	F	A	M	D	I	L	G	N	V	V	E	E	A	G	L	G	Q	E	M	G	E	P	D	R	T	C	V	P	V	L	G	S	L	T	P	S	A	A	D
Query Conservation																													.				.	.
Alig confidence																													.				.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		R	I	I	A	E	Y	V	W	I	D	G	T	G	N	L	R	S	K	G	R	T	L	K	K	R	I	T	S	I	D	Q	L	P	E	W	N	F	D	G	S	S	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	P	G	H	D	I	Y	L	K	P	V	.	.	A	Y	Y	P	D	P	F	R
Template Known Secondary structure												S	S	S										S	S				S	G	G	G	S							G	G	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S											.	.						T	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.																.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	F	I	G	Q	M	L	L	T	M	V	D	E	D	G	A	P	F	D	V	E	P	R	N	V	L	N	R	L	W	Q	Q	L	R	Q	R	G	L	F	P	V	V	A	V	E	L	E	F	Y	L	L	D	R	Q	R	D	A	E	G	Y	L	Q	P	P	C	A	P	G	T	D	D	R	N	T	Q	S	Q	V	Y
Query Conservation
Alig confidence																																					.	.																													.	.	.	.	.
Template Conservation																																					.	.																													.	.	.	.	.
Template Sequence		R	G	D	N	I	V	V	L	A	A	C	Y	N	N	D	G	T	P	N	K	F	N	H	R	H	E	A	A	K	L	F	A	A	H	K	.	.	D	E	E	I	W	F	G	L	E	Q	E	Y	T	L	F	D	M	Y	D	D	V	Y	G	W	P	K	G	G	.	.	.	.	.	Y	P	A	P	Q	G	P	Y	Y	C
Template Known Secondary structure			T	T											T	T	S	S	B		T	T													T	G	.	.	G	G															T	T	S	S	B	T	T			T	T	S	.	.	.	.	.			S		S	S	S		T	T
Template Predicted Secondary structure																																					.	.																													.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.	.	.	.	.	.	.	160
		194	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		S	V	D	N	L	N	H	F	.	A	D	V	L	N	D	I	D	E	L	A	Q	L	Q	L	I	P	A	D	G	A	V	A	E	A	S	P	G	Q	F	E	I	N	L	Y	H	T	D	N	V	L	E	A	C	D	D	A	L	A	L	K	R	L	V	R	L	M	A	E	K	H	K	M	H	A	T	F	M	A	K	P
Query Conservation										.
Alig confidence										.																																							.
Template Conservation																																																	.
Template Sequence		G	V	G	A	G	K	V	Y	A	R	D	M	I	E	A	H	Y	R	A	C	L	Y	A	G	L	E	I	S	G	I	N	A	E	V	M	P	S	Q	W	E	F	Q	V	G	P	C	T	.	G	I	D	M	G	D	Q	L	W	M	A	R	Y	F	L	H	R	V	A	E	E	F	G	I	K	I	S	F	H	P	K	P
Template Known Secondary structure				S	T	T	T		S																T										S	S	T	T											.	T																				T	T	T							S		S
Template Predicted Secondary structure																																																	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		273	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Y	E	E	H	.	A	G	S	G	M	H	I	H	I	S	M	Q	N	N	R	G	E	N	V	L	S	D	A	E	G	E	D	S	P	L	L	K	K	M	L	A	G	M	I	D	L	M	P	S	S	M	A	L	L	A	P	N	V	N	S	Y	R	R	F	Q	P	G	M	Y	V	P	T	Q	A	S	W	G	H	N	N
Query Conservation						.
Alig confidence						.																		.	.	.	.	.	.	.																								.	.													.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.																								.	.													.	.	.	.	.	.	.
Template Sequence		L	K	G	D	W	N	G	A	G	C	H	A	N	V	S	T	K	E	M	R	Q	P	.	.	.	.	.	.	.	G	G	T	K	Y	I	E	Q	A	I	E	K	L	S	K	R	H	A	E	H	I	K	L	.	.	Y	G	S	D	N	D	M	R	S	M	T	A	.	.	.	.	.	.	.	F	S	S	G	V	A	N
Template Known Secondary structure		S	S	S	S	S				B												S	S	.	.	.	.	.	.	.	S	T														T							S	.	.	S		T	T	G	G	G				S		.	.	.	.	.	.	.						S
Template Predicted Secondary structure																								.	.	.	.	.	.	.																								.	.													.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.								.	.	.	300	.	.	.
		352	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		R	T	V	A	L	R	I	P	.	.	C	G	D	R	H	N	H	R	V	E	Y	R	V	A	G	A	D	A	N	P	Y	L	V	M	A	A	I	F	A	G	I	L	H	G	L	D	N	E	L	P	L	Q	E
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		R	G	S	S	I	R	I	P	R	S	V	A	K	E	G	Y	G	Y	F	E	D	R	R	P	A	S	N	I	D	P	Y	L	V	T	G	I	M	C	E	T	V	C	G	A	I	D	N	A	D	M	T	K	E
Template Known Secondary structure		T	T	S	S											T										B	T	T																		B	T	T	B		T	T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions