Job Description Q5H777 Confidence 100.00% Date Wed Jan 25 15:21:15 GMT 2012 Rank 8 Aligned Residues 338 % Identity 16% Template c2d3aJ_ PDB info PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate Resolution 2.63 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.														.				.	.
Query SS confidence																													.	.	.														.				.	.
Query Sequence		T	Q	E	V	K	R	Y	L	E	R	Y	P	N	T	Q	Y	V	D	V	L	L	T	D	L	N	G	C	.	.	.	F	R	G	K	R	I	P	V	S	S	L	K	K	.	L	E	K	.	.	G	C	Y	F	P	A	S	V	F	A	M	D	I	L	G	N	V	V	E	E	A	G	L	G	Q	E	M	G	E	P	D
Query Conservation																													.	.	.														.				.	.
Alig confidence													.																.	.	.														.				.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	D	L	V	N	L	N	L	S	D	.	T	T	E	K	I	I	A	E	Y	I	W	I	G	G	S	G	M	D	L	R	S	K	A	R	T	L	P	G	P	V	T	D	P	S	K	L	P	K	W	N	Y	D	G	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	A	P	G	E	D	S	E
Template Known Secondary structure							T			G	G	G	.	T		S											T	T	S	S										S	S					G	G	G	S							G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S		S	T	T
Template Predicted Secondary structure													.																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60														.	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	C	V	P	V	L	G	S	L	T	P	S	A	A	D	P	E	F	I	G	Q	M	L	L	T	M	V	D	E	D	G	A	P	F	D	V	E	P	R	N	V	L	N	R	L	W	Q	Q	L	R	Q	R	G	L	F	P	V	V	A	V	E	L	E	F	Y	L	L	D	R	Q	R	D	A	E	G	Y	L	Q	P
Query Conservation
Alig confidence								.	.																																																																				.	.	.
Template Conservation								.	.																																																																				.	.	.
Template Sequence		V	I	L	Y	P	Q	.	.	A	I	F	K	D	P	F	R	R	G	N	N	I	L	V	M	C	D	C	Y	T	P	A	G	E	P	I	P	T	N	K	R	Y	S	A	A	K	I	F	S	S	P	E	V	A	A	E	E	P	W	Y	G	I	E	Q	E	Y	T	L	L	Q	K	D	T	N	W	P	.	.	.	L	G
Template Known Secondary structure								.	.						T	T	T		T	T											T	T	S		B		T	T												S																					T	T	T			B	.	.	.	T	T
Template Predicted Secondary structure								.	.																																																																				.	.	.
Template SS confidence
		70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	A	P	G	T	D	D	R	N	T	Q	S	Q	V	Y	S	V	D	N	L	N	H	F	A	D	V	L	N	D	I	D	E	L	A	Q	L	Q	L	I	P	A	D	G	A	V	A	E	A	S	P	G	Q	F	E	I	N	L	Y	H	T	D	N	V	L	E	A	C	D	D	A	L	A	L	K	R	L	V	R	L
Query Conservation
Alig confidence																																																																.
Template Conservation																																																																.
Template Sequence		W	P	I	G	G	F	P	G	P	Q	G	P	Y	Y	C	G	I	G	A	E	K	S	F	G	R	D	I	V	D	A	H	Y	K	A	C	L	Y	A	G	I	N	I	S	G	I	N	G	E	V	M	P	G	Q	W	E	F	Q	V	G	P	S	V	.	G	I	S	S	G	D	Q	V	W	V	A	R	Y	I	L	E	R
Template Known Secondary structure		S		T	T	S			S		S	S	S		T	T			S	T	T	T																		T										S	S	T	T											.	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		M	A	E	K	H	K	M	H	A	T	F	M	A	K	P	Y	E	E	H	.	A	G	S	G	M	H	I	H	I	S	M	Q	N	N	R	G	E	N	V	L	S	D	A	E	G	E	D	S	P	L	L	K	K	M	L	A	G	M	I	D	L	M	P	S	S	M	A	L	L	A	P	N	V	N	S	Y	R	R	F	Q
Query Conservation																					.
Alig confidence																					.																					.	.	.	.	.												.	.										.	.	.
Template Conservation																																										.	.	.	.	.												.	.										.	.	.
Template Sequence		I	T	E	I	A	G	V	V	V	T	F	D	P	K	P	I	P	G	D	W	N	G	A	G	A	H	T	N	Y	S	T	E	S	M	R	K	E	G	G	Y	.	.	.	.	.	E	V	I	K	A	A	I	E	K	L	K	.	.	L	R	H	K	E	H	I	A	A	.	.	.	Y	G	E	G	N	E	R	R	L	T
Template Known Secondary structure							T							S		S	S		S	S	S				B								T	T	T	S	S	T	T			.	.	.	.	.												.	.		T						T	T	.	.	.	S		T	T						S
Template Predicted Secondary structure																																										.	.	.	.	.												.	.										.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.
		337	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure								.	.																				.	.
Query SS confidence								.	.																				.	.
Query Sequence		P	G	M	Y	V	P	.	.	T	Q	A	S	W	G	H	N	N	R	T	V	A	L	R	I	P	C	G	.	.	D	R	H	N	H	R	V	E	Y	R	V	A	G	A	D	A	N	P	Y	L	V	M	A	A	I	F	A	G	I	L
Query Conservation								.	.																				.	.
Alig confidence								.	.																				.	.
Template Conservation
Template Sequence		G	R	H	E	T	A	D	I	N	T	F	S	W	G	V	A	N	R	G	A	S	V	R	V	G	R	E	T	E	Q	N	G	K	G	Y	F	E	D	R	R	P	A	S	N	M	D	P	Y	V	V	T	S	M	I	A	E	T	T	I
Template Known Secondary structure		S	S	S	S				T	T						S	S		T	T	S	S										T	T										B	T	T															T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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