Job Description Q5H777 Confidence 100.00% Date Wed Jan 25 15:21:15 GMT 2012 Rank 3 Aligned Residues 436 % Identity 24% Template c1htoB_ PDB info PDB header:ligase Chain: B: PDB Molecule:glutamine synthetase; PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis Resolution 2.40 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		G	S	A	F	T	Q	E	V	K	R	Y	L	E	R	Y	P	N	T	Q	Y	V	D	V	L	L	T	D	L	N	G	C	F	R	G	K	R	I	P	V	S	S	L	K	K	.	.	L	E	K	G	C	Y	F	P	A	S	V	F	A	M	D	I	L	G	N	V	V	E	E	A	G	L	G	Q	E	M	G	E	P	D
Query Conservation																																														.	.
Alig confidence																	.																													.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	K	T	P	D	D	V	F	K	L	A	K	D	E	.	K	V	E	Y	V	D	V	R	F	C	D	L	P	G	I	M	Q	H	F	T	I	P	A	S	A	F	D	K	S	V	F	D	D	G	L	A	F	D	G	S	S	I	.	.	.	.	.	.	.	.	.	.	.	.	R	G	F	Q	S	I	H	E	S	D
Template Known Secondary structure																T	.	T											S	S	S									G	G	G		S						T								S	S	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S			T	T	T
Template Predicted Secondary structure																	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.		.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.													.	.	660	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																.																										.	.
Query SS confidence																																.																										.	.
Query Sequence		R	T	C	V	P	V	L	G	S	L	T	P	S	A	A	D	P	E	F	I	G	Q	M	L	L	T	M	V	D	E	.	D	G	A	P	F	D	V	E	P	R	N	V	L	N	R	L	W	Q	Q	L	R	Q	R	G	L	.	.	F	P	V	V	A	V	E	L	E	F	Y	L	L	D	R	Q	R	D	A	E	G	Y
Query Conservation																																.																										.	.
Alig confidence																																.																										.	.
Template Conservation
Template Sequence		M	L	L	L	P	D	P	E	T	A	R	I	D	P	F	R	A	A	K	T	L	N	I	N	F	F	V	H	D	P	F	T	L	E	P	Y	S	R	D	P	R	N	I	A	R	K	A	E	N	Y	L	I	S	T	G	I	A	D	T	A	Y	F	G	A	E	A	E	F	Y	I	F	D	S	V	S	F	D	S	R	A
Template Known Secondary structure															S	S		S	S												T	T	T			B		T	T																	S	S		S														S								S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		175	.																					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Query Sequence		L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	C	A	P	G	T	D	D	R	N	T	Q	S	Q	V	Y	S	V	D	N	L	N	H	F	A	D	V	L	N	D	I	D	E	L	A	Q	L	Q	L	I	P	A	D	G	A	V	A	E	A	S	P	.	G	Q	F	E	I
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Conservation
Template Sequence		N	G	S	F	Y	E	V	D	A	I	S	G	W	W	N	T	G	A	A	T	E	A	D	G	S	P	N	R	G	Y	K	V	R	H	K	G	G	Y	F	P	V	A	P	N	D	Q	Y	V	D	L	R	D	K	M	L	T	N	L	I	N	S	G	F	I	L	E	K	G	H	H	E	V	G	S	G	G	Q	A	E	I
Template Known Secondary structure		S									T	T		G	G	G	T	T		S	B		T	T	S		B									S	S		S	S			T	T	T																	T	T					T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		N	L	Y	H	T	D	N	V	L	E	A	C	D	D	A	L	A	L	K	R	L	V	R	L	M	A	E	K	H	K	M	H	A	T	F	M	A	K	P	Y	E	E	H	A	G	S	G	M	H	I	H	I	S	M	Q	N	N	R	G	E	N	V	L	S	D	A	E	G	E	.	.	D	S	P	L	L	K	K	M	L
Query Conservation																																																																							.	.
Alig confidence								.																																																			.												.	.
Template Conservation								.																																																			.
Template Sequence		N	Y	Q	F	N	S	.	L	L	H	A	A	D	D	M	Q	L	Y	K	Y	I	I	K	N	T	A	W	Q	N	G	K	T	V	T	F	M	P	K	P	L	F	G	D	N	G	S	G	M	H	C	H	Q	S	L	W	K	D	.	G	A	P	L	M	Y	D	E	T	G	Y	A	G	L	S	D	T	A	R	H	Y	I
Template Known Secondary structure								.																						T	T							S		S	S	T	T	S														T	.	T			S	S	B		T	T	S	G	G	G	B
Template Predicted Secondary structure								.																																																			.
Template SS confidence
		222	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		A	G	M	I	D	L	M	P	S	S	M	A	L	L	A	P	N	V	N	S	Y	R	R	F	Q	P	G	M	Y	V	P	T	Q	A	S	W	G	H	N	N	R	T	V	A	L	R	I	P	.	.	C	G	D	R	H	N	H	R	V	E	Y	R	V	A	G	A	D	A	N	P	Y	L	V	M	A	A	I	F	A	G
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence		G	G	L	L	H	H	A	P	S	L	L	A	F	T	N	P	T	V	N	S	Y	K	R	L	V	P	G	Y	E	A	P	I	N	L	V	Y	S	Q	R	N	R	S	A	C	V	R	I	P	I	T	G	S	N	P	K	A	K	R	L	E	F	R	S	P	D	S	S	G	N	P	Y	L	A	F	S	A	M	L	M	A
Template Known Secondary structure																S		S	T	T					S	S	S	S	S			S							S	S		T	T									T	T		G	G	G							S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410							.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																								.	.	.																		.
Query SS confidence																							.	.	.	.	.	.																								.	.	.																		.
Query Sequence		I	L	H	G	L	D	N	E	L	P	L	Q	E	E	V	E	G	N	G	L	E	.	.	.	.	.	.	Q	E	G	L	P	F	P	I	R	Q	S	D	A	L	G	E	F	I	E	N	D	H	L	.	.	.	R	R	Y	L	G	E	R	F	C	H	V	Y	H	A	C	K	N	.	D	E	L	L	Q	F	E	R	L
Query Conservation																							.	.	.	.	.	.																								.	.	.																		.
Alig confidence																							.	.	.	.	.	.																								.	.	.																		.
Template Conservation
Template Sequence		G	L	D	G	I	K	N	K	I	E	P	Q	A	P	V	D	K	D	L	Y	E	L	P	P	E	E	A	A	S	I	P	Q	T	P	T	Q	L	S	D	V	I	D	R	L	E	A	D	H	E	Y	L	T	E	G	G	V	F	T	N	D	L	I	E	T	W	I	S	F	K	R	E	N	E	I	E	P	V	N	I	R
Template Known Secondary structure								T	T									S		S	S	S			T	T	T	G	G	G	S		B			S	S																	G	G	G	S	S																T							S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	E	T	E	I	E	W	M	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	H	P	Y	E	F	A	L	Y	Y	D
Template Known Secondary structure				T							T	T
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.