Job Description P34210 Confidence 9.85% Date Thu Jan 5 11:53:03 GMT 2012 Rank 39 Aligned Residues 170 % Identity 9% Template d1fepa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.40

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		N	V	K	G	W	F	L	K	E	S	D	Y	R	L	A	I	M	A	G	Y	Q	E	S	R	Y	S	F	N	A	T	G	G	T	Y	I	Y	S	E	N	G	G	F	R	N	E	T	G	A	L	P	D	K	I	K	V	I	G	Y	K	Q	H	F	K	I	P	Y	V	G	L	T	G	N	Y	R	Y	.	D	N	F	E
Query Conservation																																																																													.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	Y	Q	W	D	N	V	P	K	A	V	V	E	G	L	E	G	S	L	N	V	P	V	S	E	T	V	X	W	T	N	N	I	T	Y	X	L	K	S	E	N	K	T	T	G	D	R	L	S	I	.	.	.	.	.	.	.	.	.	.	I	P	E	Y	T	L	N	S	T	L	S	W	Q	A	R	E	D	L	S
Template Known Secondary structure		B																									T	T																T	T	T				S	S		.	.	.	.	.	.	.	.	.	.			S													T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.											.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		F	G	G	A	F	K	Y	S	G	W	V	R	G	S	D	N	D	E	H	Y	V	R	Q	T	T	F	R	S	K	V	I	N	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	I	T	P	E	A	K	V	Y	I	E	G	V	.	.	.	W	S	R	L	T	N	K	K	G	D	T	S	L	Y	D	R	S	D	N	T
Query Conservation																																																											.	.	.
Alig confidence																													.																														.	.	.
Template Conservation																													.
Template Sequence		X	Q	T	T	F	T	W	Y	G	K	Q	Q	P	K	K	Y	N	Y	K	G	Q	P	A	V	G	P	E	.	T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	K	N	V	S	L	T	G	G	V	D	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T	T	G	D	L	A	G	A	N
Template Known Secondary structure												B				S	B		T	T	S		B			G	G	G	.	G			B															S	S	S									S	T	T				B				S		S	S					T	T	S	S	S
Template Predicted Secondary structure																													.
Template SS confidence
		621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.		.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	H	N	N	N	G	A	G	I	E	N	Y	N	F	I	T	T	A	G	L	K	Y	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	I	A	G	A	G	A	Y	T	Y	N	E	P	G	R	T	W	Y	X	S	V	N	T	H	F
Template Known Secondary structure							T	T					B
Template Predicted Secondary structure
Template SS confidence
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions