Job Description P34210 Confidence 97.40% Date Thu Jan 5 11:53:03 GMT 2012 Rank 9 Aligned Residues 182 % Identity 13% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	K	G	A	V	N	W	E	L	N	P	W	L	S	V	G	A	A	G	W	T	T	L	N	S	R	G	G	N	M	V	D	Q	D	W	M	D	S	G	T	P	G	T	W	T	D	E	S	R	H	P	D	T	R	L	N	Y	A	N	E	F	D	L	N	V	K	G	W	F	L	K	E	S	D	Y	R	L	A
Query Conservation
Alig confidence																												.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	.	.	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	.	.	.	.	.	.	.	.	.	.	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E
Template Known Secondary structure													S	S	S	B												.	.									S	S	S										.	.	.	.	.	.	.	.	.	.											B					G	G	G
Template Predicted Secondary structure																												.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		816	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.			.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.											.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	A	G	Y	Q	E	S	R	Y	S	F	N	A	T	G	G	T	Y	I	Y	S	E	N	G	G	F	R	N	E	T	G	A	L	P	D	K	I	K	V	I	G	Y	K	Q	H	F	K	I	P	Y	V	G	L	T	G	N	Y	R	Y	D	N	F	E	F	G	G	A	F	K	Y	S	G	W	V	R	G	S	D	N
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.															.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.															.	.	.
Template Sequence		P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	.	.	.	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	.	.	.
Template Known Secondary structure																			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																								.	.	.			T	T	S										.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.															.	.	.
Template SS confidence
		884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.																		.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.				.	.	.	930	.	.	.	.	.	.	.	.	.	940
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	H	Y	V	R	Q	T	T	F	R	S	K	V	I	N	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	I	T	P	E	A	K	V	Y	I	E	G	V	W	S	R	L	T	N	K	K	G	D	T	S	L	Y	D	R	S	D	N	T	S	E	H	N	N	N	G	A	G	I	E	N	Y	N	F	I	T	T	A
Query Conservation
Alig confidence		.	.										.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.										.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	G	W	T	Q	E	F	K	S	T	.	.	.	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	I	N	I	P	W	S	F	H	A
Template Known Secondary structure		.	.										.	.	.			B														G	G	G	B												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.	.										.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				941	.	.	.	.	.	.	.	.				950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980																									.	.	.	.	.	.	.	.	.	990	.
		310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	K	Y	T	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	R	Y	S	F
Template Known Secondary structure					B
Template Predicted Secondary structure
Template SS confidence
		1005	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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