Job Description P34210 Confidence 93.92% Date Thu Jan 5 11:53:03 GMT 2012 Rank 23 Aligned Residues 127 % Identity 17% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		E	S	D	Y	R	L	A	I	M	A	G	Y	Q	E	S	R	Y	S	F	N	A	T	G	G	T	Y	I	Y	S	E	N	G	G	F	R	N	E	T	G	A	L	P	D	K	I	K	V	I	G	Y	K	Q	H	F	K	I	P	Y	V	G	L	T	G	N	Y	R	Y	.	.	.	D	N	F	E	F	G	G	A	F	K
Query Conservation																																																																					.	.	.
Alig confidence																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	.	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G
Template Known Secondary structure		S	S													S	S	.	S												S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S															T	T		T	T	T
Template Predicted Secondary structure																		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50																				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	G	W	V	R	G	S	D	N	D	E	H	Y	V	R	Q	T	T	F	R	S	K	V	I	N	Q	N	Y	Y	S	V	A	V	N	A	G	Y	Y	I	T	P	E	A	K	V	Y	I	E	G	V	W	S	R	L	T	N	K	K	G	D	T	S	L	Y	D	R	S	D	N	T	S	E	H	N	N	N	G	A	G
Query Conservation
Alig confidence																																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	.	.	T	R	L	E	Y	Q	W	T	N	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	S	B						S	S	S						B																S	S	S		S	S	S			.	.									S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	N	Y	N	F	I	T	T	A	G	L	K	Y	T	F
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		.	.	.													S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					138	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions