Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 12 Aligned Residues 413 % Identity 26% Template c3i7fA_ PDB info PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		S	V	V	P	V	A	D	V	L	Q	G	R	V	A	V	D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	L	.	.	.	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I	V	T	G
Query Conservation																																																											.	.	.
Alig confidence										.	.																						.															.	.										.	.	.
Template Conservation										.	.																						.															.	.
Template Sequence		K	Y	T	E	I	E	E	L	.	.	V	P	A	M	A	E	K	T	V	T	I	R	A	R	V	Q	A	V	R	G	K	.	G	N	M	V	F	L	F	L	R	K	G	I	Y	T	.	.	C	Q	A	L	V	M	K	S	E	T	I	S	K	E	F	V	Q	F	C	Q	K	I	S	A	E	S	I	C	D	I	T	G
Template Known Secondary structure			B			G	G	G		.	.	S	G	G	G	T	T																.	S	S									T	T			.	.								S	S	S	S										T			T	T
Template Predicted Secondary structure										.	.																						.															.	.
Template SS confidence
		45	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																										.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	V	A	S	P	G	.	.	.	.	.	Q	G	Q	Q	F	E	I	Q	A	S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	M	A	A	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	I	E	Y	L	R	E	V	A	H	L	R
Query Conservation									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	K	A	V	E	K	P	I	E	K	A	T	Q	Q	D	V	E	I	H	V	T	S	I	A	V	V	S	L	A	E	Y	P	L	P	M	Q	I	E	D	L	T	F	P	S	S	V	F	K	K	Q	E	E	D	I	A	K	V	K	A	S	A	Q	K	Y	V	K	V	S	Q	D	T	R	L	D	N	R	M	L	D
Template Known Secondary structure							S	S			T	T	S	S	S		S																B	S		S	S		S	G	G	G	S													T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	T	V	T	N	I	A	I	F	R	I	Q	S	A	C	C	G	L	F	R	E	F	L	T	S	Q	K	F	V	E	I	H	T	P	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	Y	L
Template Known Secondary structure		T	T	S																								T	T								S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																																								.	.	270	.
		209	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.																																									.
Query SS confidence											.																																									.
Query Sequence		T	V	S	G	Q	L	N	G	E	.	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	.	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K
Query Conservation											.																																									.
Alig confidence											.																																									.
Template Conservation
Template Sequence		A	Q	S	P	Q	L	Y	K	Q	M	A	I	M	G	D	F	R	K	V	F	E	V	G	P	V	F	R	A	E	N	S	N	T	R	R	H	L	T	E	F	E	G	L	D	I	E	M	E	I	V	E	N	Y	H	E	C	I	D	V	M	E	K	L	F	T	F	I	F	D	E	I	P	K	R	F	P	D	E	L	K
Template Known Secondary structure			S		T									T	T	T														S				S	S	S			S												S	S		T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F
Query Conservation
Alig confidence									.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		V	I	R	K	Q	Y	P	.	.	.	.	.	.	F	E	D	L	I	Y	R	P	F	L	R	L	T	Y	K	E	A	I	E	M	L	R	A	S	G	E	T	I	G	D	Y	D	D	F	T	T	P	Q	E	V	K	L	G	E	L	I	K	A	K	Y	N	T	D	F	Y	I	L	D	K	F	P	A	A	I	R	P	F
Template Known Secondary structure							S		.	.	.	.	.	.								S																T	T					T	T																						S								B	G	G	G	S		T
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		367		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		Y	.	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V
Query Conservation			.
Alig confidence			.																					.
Template Conservation																								.
Template Sequence		Y	T	M	P	D	I	D	D	P	N	Y	S	N	S	Y	D	V	F	V	R	G	Q	.	E	I	T	S	G	A	Q	R	I	H	D	P	E	F	L	M	K	R	C	I	E	K	G	V	D	P	A	T	L	K	D	Y	I	E	S	F	R	F	G	S	W	P	H	A	G	C	G	I	G	L	E	R	I	T	M	L	Y
Template Known Secondary structure		T	B		B		S	S		T	T	B	B	S							T	T		.																						T	T			G	G	G	G						T	T	S	S
Template Predicted Secondary structure																								.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	Q	N	V	R	D	V	I	P	F	P	R	T	P	R	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	I	P	N	I	R	K	V	T	L	F	P	R	D	P	I	R	L	N
Template Known Secondary structure		T	T		S		G	G	G	G	S	S	S			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.