Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 22 Aligned Residues 296 % Identity 20% Template c3g1zB_ PDB info PDB header:ligase Chain: B: PDB Molecule:putative lysyl-trna synthetase; PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium Resolution 1.95 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.
Predicted Secondary structure																																														.																															.	.	.
Query SS confidence																																														.																															.	.	.
Query Sequence		P	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	.	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	.	.	.	G	K
Query Conservation																																														.																															.	.	.
Alig confidence																																														.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	Q	P	S	A	S	I	P	N	L	L	K	R	A	A	I	M	A	E	I	R	R	F	F	A	D	R	G	V	L	E	V	E	T	P	C	M	S	Q	A	T	V	T	D	I	H	L	F	P	F	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	V	G	P	Q	G	I
Template Known Secondary structure		T	S		S	S																						T	T								S			S						T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.																					.	60	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		E	S	F	L	T	V	S	G	Q	L	N	G	E	.	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D
Query Conservation															.
Alig confidence															.																									.																																									.
Template Conservation																																								.																																									.
Template Sequence		N	L	Y	L	M	T	S	P	E	Y	H	M	K	R	L	L	A	A	G	C	G	P	V	F	Q	L	C	R	S	F	R	N	E	E	M	G	R	H	.	H	N	P	E	F	T	M	L	E	W	Y	R	P	H	Y	D	M	Y	R	L	M	N	E	V	D	D	L	L	Q	Q	V	L	D	C	Q	P	A	E	S	L	.
Template Known Secondary structure							S		S										T	T			S														B	T	T	.	B		S											T																											.
Template Predicted Secondary structure																																								.																																									.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	Y	Q	Q	A	F	Q	R	H	L	E	I	D	P	L	S	A	D	K	T	Q	L	R	E	A	A	A	K	L	D	L	E	E	D	R	D	T	L	L	Q	L	L	F	T	M	G	V	E	P	H	I	G	K	E	K	.	.	.	P	T	F	I	Y	H	F	P	A	S	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.											S			T	T	T													T	T																	T	G	G	G	S	S	S	S	S	.	.	.								B	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.
Template SS confidence
													148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.						.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		K	A	F	Y	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	.	.	.	.	.	L	E	M	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F
Query Conservation																																														.	.	.	.	.
Alig confidence																										.																				.	.	.	.	.
Template Conservation																										.
Template Sequence		A	S	L	A	Q	I	S	T	E	D	H	R	V	A	E	R	F	E	V	Y	Y	K	G	I	.	E	L	A	N	G	F	H	E	L	T	D	A	R	E	Q	Q	Q	R	F	E	Q	D	N	R	K	R	G	L	P	Q	Q	P	I	D	Q	N	L	L	D	A	L	A	A	G	L	P	D	C	S	G	V	A	L	G	V
Template Known Secondary structure			T	T	B		B		S	S		T	T	B	B	S							T	T		.								B																																							S
Template Predicted Secondary structure																										.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	I	A	Y	V	T	G	V	Q	N	V	R	D	V	I	P	F	P	R	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	V	M	L	A	L	G	A	E	S	L	A	D	V	I	A	F	T	V	D	R
Template Known Secondary structure										T		S	S	G	G	G	T	S	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions