Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 8 Aligned Residues 414 % Identity 21% Template c3e9hB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine Resolution 2.10 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	.	.	L	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I	V	T	G	K	V	V	A	S	P	G	Q	G	Q	Q	F	E	I	Q	A
Query Conservation																																											.	.
Alig confidence																		.															.	.									.	.																											.	.
Template Conservation																		.															.	.																																					.	.
Template Sequence		Q	I	E	V	A	V	A	G	R	I	M	T	K	R	G	M	.	G	K	A	G	F	A	H	I	Q	D	V	T	G	Q	.	.	I	Q	I	Y	V	R	Q	D	D	V	G	E	Q	Q	Y	E	L	F	K	I	S	D	L	G	D	I	V	G	V	R	G	T	M	F	K	T	.	.	K	V	G	E	L	S	I	K	V
Template Known Secondary structure																		.	T	T									T	T			.	.																							T	T													.	.	T	T
Template Predicted Secondary structure																		.															.	.																																					.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	M	A	A	K	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	.	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A
Query Conservation																																					.
Alig confidence																.	.	.	.	.	.																.
Template Conservation																.	.	.	.	.	.
Template Sequence		S	S	Y	E	F	L	T	K	A	L	R	P	L	P	.	.	.	.	.	.	E	K	D	I	E	Q	R	Y	R	Q	R	Y	L	D	L	I	M	N	P	E	S	K	K	T	F	I	T	R	S	L	I	I	Q	S	M	R	R	Y	L	D	S	H	G	Y	L	E	V	E	T	P	M	M	H	A	V	A	G	G	A	A
Template Known Secondary structure											S	S				.	.	.	.	.	.				T	T					T																																T	T								S			S	S			S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	.	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P
Query Conservation																																														.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																								.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Sequence		A	R	P	F	I	T	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	D	M	T	L	Y	M	R	I	A	I	E	L	H	L	K	R	L	I	V	G	G	L	E	K	V	Y	E	I	G	R	V	F	R	N	E	G	I	S	T	.	R	H	N	P	E	F	T	M	L	E	L
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T							S		S										T	T																	B	T	.	T	B		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template SS confidence
		210	.	.	.	.	.	.	.																			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.																											.
Query SS confidence																																.	.	.	.	.																											.
Query Sequence		E	V	A	F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	.	.	.	.	.	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	.	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K
Query Conservation																																.	.	.	.	.																											.
Alig confidence																																.	.	.	.	.																											.
Template Conservation
Template Sequence		Y	E	A	Y	A	D	F	R	D	I	M	K	L	T	E	N	L	I	A	H	I	A	T	E	V	L	G	T	T	K	I	Q	Y	G	E	H	L	V	D	L	T	P	E	W	R	R	L	H	M	V	D	A	I	K	E	Y	V	G	V	D	F	W	R	Q	M	S	D	E	E	A	R	E	L	A	K	E	H	G	V	E
Template Known Secondary structure					T																							S		S					T	T							S	S																			S	S															T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F	Y	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R
Query Conservation
Alig confidence																					.																																										.
Template Conservation																					.																																										.
Template Sequence		V	A	P	H	M	T	F	G	H	I	V	N	E	F	F	E	Q	K	V	.	E	D	K	L	I	Q	P	T	F	I	Y	G	H	P	V	E	I	S	P	L	A	K	K	N	P	D	D	P	R	F	T	D	R	F	E	L	F	I	V	G	R	.	E	H	A	N	A	F	T	E	L	N	D	P	I	D	Q	R	Q	R
Template Known Secondary structure				T	T															T	.	G	G	G			S								B	G	G	G		T	T	B		B		S	S		T	T	B	B	S							T	T		.								B
Template Predicted Secondary structure																					.																																										.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		407	.	.	410									.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.
Query Sequence		M	L	E	M	.	.	.	.	.	.	.	.	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V	T	G	V	Q	N	V	R	D	V	I	P	F	P	R	T	P	R
Query Conservation						.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	E	Q	L	K	E	R	E	Q	G	N	D	E	A	H	E	M	D	E	D	F	L	E	A	L	E	Y	G	M	P	P	T	G	G	L	G	I	G	V	D	R	L	V	M	L	L	T	N	S	P	S	I	R	D	V	L	L	F	P	Q	M	R	H
Template Known Secondary structure											T	T		T	T														T				S															T	T	T		S	S	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.