Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 7 Aligned Residues 418 % Identity 16% Template c3bjuB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase Resolution 2.31 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		V	A	D	V	L	Q	G	R	V	A	V	D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	L	.	.	.	.	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I	V	T	G	K	V	V
Query Conservation																																																							.	.	.	.
Alig confidence																																												.	.										.	.	.	.
Template Conservation																																												.	.
Template Sequence		Y	S	H	L	Q	P	G	D	H	L	T	D	I	T	L	K	V	A	G	R	I	H	A	K	R	A	S	G	G	K	L	I	F	Y	D	L	R	G	E	G	V	K	.	.	L	Q	V	M	A	N	S	R	N	Y	K	S	E	E	E	F	I	H	I	N	N	K	L	R	R	G	D	I	I	G	V	Q	G	N	P	G
Template Known Secondary structure		S	T	T			T	T		B		T	T															S	S	S	S									T	T			.	.							T	T	T	S	S														T	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		A	S	P	G	Q	G	Q	Q	F	E	I	Q	A	S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	M	A	A	K	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	.	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V
Query Conservation																																																		.
Alig confidence				.	.																									.	.	.	.	.	.	.	.	.												.
Template Conservation				.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		K	T	.	.	K	K	G	E	L	S	I	I	P	Y	E	I	T	L	L	S	P	C	L	H	M	L	P	K	.	.	.	.	.	.	.	.	.	E	T	R	Y	R	Q	R	Y	L	D	L	I	L	N	D	F	V	R	Q	K	F	I	I	R	S	K	I	I	T	Y	I	R	S	F	L	D	E	L	G	F	L	E	I
Template Known Secondary structure				.	.	T	T																		S					.	.	.	.	.	.	.	.	.																																						T	T
Template Predicted Secondary structure				.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.										.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	.	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	N
Query Conservation																																																											.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	P	M	M	N	I	I	P	G	G	A	V	A	K	P	F	I	T	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	L	D	M	N	L	Y	M	R	I	A	P	E	L	Y	H	K	M	L	V	V	G	G	I	D	R	V	Y	E	I	G	R	Q	F	R	N	E	G	I	D
Template Known Secondary structure					S			S	S			S	S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T							S		S										T	T																	B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	.	.
Query Conservation																																																																																.	.
Alig confidence			.																																																										.	.	.	.	.															.	.
Template Conservation			.																																																										.	.	.	.	.
Template Sequence		L	.	T	H	N	P	E	F	T	T	C	E	F	Y	M	A	Y	A	D	Y	H	D	L	M	E	I	T	E	K	M	V	S	G	M	V	K	H	I	T	G	S	Y	K	V	T	Y	H	P	D	G	P	E	G	Q	A	Y	D	V	D	.	.	.	.	.	F	T	P	P	F	R	R	I	N	M	V	E	E	L	E	K
Template Known Secondary structure		T	.	T	B		S											T																						T	S	S	S						T	T		T	T	S							.	.	.	.	.			S	S
Template Predicted Secondary structure			.																																																										.	.	.	.	.
Template SS confidence
		329		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.						.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
																								318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F	Y	M	R	L	N	E	D	G	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																				.
Template Sequence		A	L	G	M	K	L	P	E	T	N	L	F	E	T	E	E	T	R	K	I	L	D	D	I	C	V	A	K	A	V	E	C	P	P	P	R	T	T	A	R	L	L	D	K	L	V	G	E	F	L	.	E	V	T	C	I	N	P	T	F	I	C	D	H	P	Q	I	M	S	P	L	A	K	W	H	R	S	K	E	G
Template Known Secondary structure				T	S					G	G	G	T	T	S														T	T					S																T	.	G	G	G			S								B	G	G	G		T	T	B		B		S	S	S	T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.									.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.
Query Sequence		T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	.	.	.	.	.	.	.	.	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V	T	G
Query Conservation																																											.	.	.	.	.	.	.	.
Alig confidence														.																													.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		L	T	E	R	F	E	L	F	V	M	K	K	.	E	I	C	N	A	Y	T	E	L	N	D	P	M	R	Q	R	Q	L	F	E	E	Q	A	K	A	K	A	A	G	D	D	E	A	M	F	I	D	E	N	F	C	T	A	L	E	Y	G	L	P	P	T	A	G	W	G	M	G	I	D	R	V	A	M	F	L	T	D
Template Known Secondary structure		B	B	S							T	T		.								B																				T	T		T	T	S												T	T	T			S																T	T
Template Predicted Secondary structure														.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.		.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	N	V	R	D	V	I	P	F	P	R	T	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	N	I	K	E	V	L	L	F	P	A	M	K	K
Template Known Secondary structure			S	S	G	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.