Job Description P0A8M0 Confidence 99.96% Date Thu Jan 5 11:08:10 GMT 2012 Rank 26 Aligned Residues 233 % Identity 16% Template c2zimA_ PDB info PDB header:ligase Chain: A: PDB Molecule:pyrrolysyl-trna synthetase; PDBTitle: pyrrolysyl-trna synthetase bound to adenylated pyrrolysine and2 pyrophosphate Resolution 2.10 Å

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	D	P	D	T	Y	P	M	A	A	K	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		N	P	K	D	E	S	G	K	P	F	R	E	L	E	S	E	L	L	S	R	R	K	K	D	L	Q	Q	.	.	I	Y	A	E	E	R	E	N	Y	L	G	K	L	E	R	E	I	T	R	F	F	V	D	R	G	F	L	E	I	K	S	P	I	L	I	P	L	E	Y	I	E	R	M	G	I	D	E	L	S	K	Q
Template Known Secondary structure			T	T					S																				.	.				T	T																			T	T								S				T						T	T					G	G	G
Template Predicted Secondary structure																													.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																													.	.							.	.	.	.	.
Query SS confidence																													.	.							.	.	.	.	.
Query Sequence		D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	.	.	V	S	G	Q	L	N	.	.	.	.	.	G	E	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A
Query Conservation																													.	.							.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.							.	.	.	.	.																											.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template Sequence		I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	K	N	F	C	L	R	P	M	L	A	P	N	L	Y	N	Y	L	R	K	L	D	R	A	L	P	D	P	I	K	I	F	E	I	G	P	C	Y	R	K	E	S	D	G	K	E	.	H	L	E	E	F	T	M	L	N	F	C	Q	M
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T					S		S												T	T	T	S		S	S														S			S	S	.			S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		288	.																	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350
		256	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		F	A	N	.	.	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W
Query Conservation					.	.
Alig confidence					.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	G	C	T	R	E	N	L	E	S	I	I	T	D	F	L	N	H	L	G	I	D	F	K	I	V	G	D	S	C	M	V	Y	G	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	V	M	H	G	D
Template Known Secondary structure		S	T	T																		T											T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.																																					.	.	390	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	.	.	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F	Y	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I
Query Conservation																		.	.
Alig confidence																		.	.																																							.
Template Conservation																																																										.
Template Sequence		L	E	L	S	S	A	V	V	G	P	I	P	L	D	R	E	W	G	I	D	K	P	W	I	G	A	G	F	G	L	E	R	L	L	K	V	K	H	D	F	K	N	I	K	R	A	A	R	S	E	S	Y	Y	N	G	I	.	S	T	N
Template Known Secondary structure										S			G	G	G	G	G	G	T			S																		T		S	S	G	G	G	G	S	S		S	S			T	T		.		S
Template Predicted Secondary structure																																																										.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions