Job Description P0A8M0 Confidence 99.56% Date Thu Jan 5 11:08:10 GMT 2012 Rank 44 Aligned Residues 196 % Identity 21% Template c2du4B_ PDB info PDB header:ligase/rna Chain: B: PDB Molecule:o-phosphoseryl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys Resolution 2.80 Å

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.												.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.							.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.							.
Query Sequence		H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	.	.	.	.	.	.	.	.	.	.	.	K	E	S	F	L	T	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.							.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																				.							.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		F	A	T	I	Q	R	L	R	E	A	Y	L	S	I	G	F	S	E	V	V	N	P	L	I	.	.	.	.	.	.	.	.	.	.	.	.	V	E	D	V	H	V	K	K	Q	F	G	R	E	A	L	A	V	L	D	.	R	C	F	Y	L	A	T	L	P	K	P	N	L	K	P	I	S	S	T	L	T	L	R	S
Template Known Secondary structure														T	T	T										.	.	.	.	.	.	.	.	.	.	.	.			T								T	T	T					G	G	.	G	S																						S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.													.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
				210	.	.	.	.		.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure		.	.						.											.	.	.															.																				.	.
Query SS confidence		.	.						.											.	.	.															.																				.	.
Query Sequence		.	.	V	S	G	Q	L	.	N	G	E	T	Y	A	C	A	L	S	.	.	.	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	.	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	.	.	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E
Query Conservation		.	.						.											.	.	.															.																				.	.
Alig confidence		.	.						.											.	.	.															.				.																.	.																.	.	.	.	.	.	.	.
Template Conservation																																									.																																	.	.	.	.	.	.	.	.
Template Sequence		H	M	T	T	G	W	F	I	T	L	S	H	I	A	D	K	L	P	L	P	I	K	L	F	S	I	D	R	C	F	R	R	E	Q	G	E	D	A	T	.	R	L	Y	T	Y	F	S	A	S	C	V	L	V	D	E	E	L	S	V	D	D	G	K	A	V	A	E	A	L	L	R	Q	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T									T	T	T	T	T	T	S		S															T	T		T	T	T	.			S												S	S																T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.																																	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	F	E	N	F	R	F	R	K	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																							257	.	.	260	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.											.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	I	K	A	F	Y	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	.	.	.	.	.	.	.	.	.	.	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.										.	.	.	.	.	.	.	.	.	.										.	.								.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.																													.	.								.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	R	S	K	Y	Y	I	P	D	T	Q	.	.	.	.	T	E	V	F	A	F	H	P	K	L	V	G	S	S	T	K	Y	S	D	G	W	I	E	I	A	T	F	G	.	.	I	Y	S	P	T	A	L	.	.	.	.	A	E	Y	D	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P
Template Known Secondary structure		T	T			T	T	B		T	T	T		.	.	.	.												T		S	S	T	T	T											.	.		B						.	.	.	.		T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure														.	.	.	.																													.	.								.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.					.	.	.	.	.	320																.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V	T	G	V	Q	N	V	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	N	L	G	L	G	V	E	R	L	A	M	I	L	Y	G	Y	D	D	V	R	K
Template Known Secondary structure																		T		S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions