Job Description P0A8M0 Confidence 97.76% Date Thu Jan 5 11:08:10 GMT 2012 Rank 85 Aligned Residues 140 % Identity 15% Template c2cj9A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of methanosarcina barkeri seryl-trna2 synthetase complexed with an analog of seryladenylate Resolution 2.3 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.									.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.												.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																				.														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	.	G	F	F	W	V	S	T	P	L	I	T	A	S	.	.	.	.	.	.	.	.	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	.	.	.	.	.	.	.	.	.	.	.	L	P	R	N	D	Q	G	K	V	D	F
Query Conservation																				.														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.														.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	I	F	R	T	F	E	K	I	V	L	E	E	L	L	E	P	L	G	Y	R	E	M	I	F	P	K	L	V	T	W	E	V	W	M	K	S	G	H	A	K	G	V	Y	P	E	I	Y	Y	V	C	P	P	Q	T	R	D	P	D	Y	W	E	E	V	A	D	Y	Y	K	V	T	H	E	V	P	T	K	L	I
Template Known Secondary structure																T	T	T	T	T	T								S											S	G	G	G	T		G	G	G							B	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.							.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																											.	.			.	.	.	.	.	.								.											.	.	.
Query SS confidence																											.	.			.	.	.	.	.	.								.											.	.	.
Query Sequence		D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	T	Y	A	C	A	.	.	L	S	.	.	.	.	.	.	K	I	Y	T	F	G	P	.	T	F	R	A	E	N	S	N	T	S	.	.	.	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	L	N	D	I	A	G	L
Query Conservation																											.	.			.	.	.	.	.	.								.											.	.	.
Alig confidence																											.	.			.	.	.	.	.	.								.											.	.	.			.										.
Template Conservation																																																												.										.
Template Sequence		K	E	K	I	A	E	P	I	G	G	M	C	Y	A	Q	C	P	P	F	W	M	Y	V	A	G	E	T	L	P	N	E	E	I	P	V	K	V	F	D	R	S	G	T	S	H	R	Y	E	S	G	G	I	H	G	I	E	R	V	.	D	E	F	H	R	I	E	I	V	.	W	I	G	T	K	E	E	V	L	K	C
Template Known Secondary structure					B		S							S	S	S	S	G	G	G	G	G	G	T	T	T					G	G	G		S							S	S								S	S				T	T	S		.	S									.
Template Predicted Secondary structure																																																												.										.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	M	L	K	Y	V	F	K	A	V	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	E	L	H	D	R	Y	M	H	I	F	N	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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