Job Description P0A8M0 Confidence 95.91% Date Thu Jan 5 11:08:10 GMT 2012 Rank 102 Aligned Residues 217 % Identity 18% Template c1yfsB_ PDB info PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine Resolution 2.08 Å

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	T	Y	A	C
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	E	I	R	E	L	F	L	S	F	F	E	K	K	G	H	T	R	V	K	S	A	P	L	V	P	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	T	L	L	F	V	N	A	G	M	V	P	F	K	N	V	F	L
Template Known Secondary structure															T	T									S	S		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S	S			S	T	T	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																																		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		222	.	.						.	.	.	.	.	230	.	.	.	.	.	.					.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.													.	.	.	.				.	.	.	.
Query SS confidence					.	.	.	.	.													.	.	.	.				.	.	.	.
Query Sequence		A	L	S	.	.	.	.	.	K	I	Y	T	F	G	P	T	F	R	A	E	.	.	.	.	N	S	N	.	.	.	.	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F
Query Conservation					.	.	.	.	.													.	.	.	.				.	.	.	.
Alig confidence					.	.	.	.	.													.	.	.	.				.	.	.	.														.							.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation																																														.							.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Sequence		G	L	E	K	R	P	Y	K	R	A	T	S	C	Q	K	C	L	R	V	S	G	K	H	N	D	L	E	Q	V	G	Y	T	S	R	H	H	T	F	F	E	M	L	G	N	.	F	S	F	G	D	Y	.	.	.	.	.	F	K	K	E	A	I	E	Y	A	W	E	F	V	T	E	V	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	S			S		S													T	T				G	G	G	T	T	T	S	S	S			S								.				S	S		.	.	.	.	.															T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.							.	.	.	.	.																	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																											.	.	.	.	.	.										.
Query SS confidence																											.	.	.	.	.	.										.
Query Sequence		A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	.	.	.	.	.	.	T	D	A	V	T	I	L	E	N	.	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K
Query Conservation																											.	.	.	.	.	.										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.										.													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	P	K	E	K	L	Y	V	S	V	Y	K	D	D	E	E	A	Y	R	I	W	N	E	H	I	G	I	P	S	E	R	I	W	R	L	G	.	.	.	E	E	D	N	F	W	Q	M	G	D	V	G	P	C	G	P	S	S	E	I	Y	V	D	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				G	G	G							T	T										T	T	T				G	G	G						.	.	.								S	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
																	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		D	I	K	A	F	Y	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	.	P	H	S	G	F	G	L	G	F	E	R
Query Conservation																																																																						.
Alig confidence					.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.
Template Conservation					.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	E	.	.	.	.	.	Y	E	G	D	E	R	Y	L	E	I	W	N	L	V	F	M	Q	Y	N	R	D	E	N	G	V	L	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	H	P	N	I	D	T	G	M	G	L	E	R
Template Known Secondary structure			T	T	.	.	.	.	.	S																					T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																															.	.	.	.	.	.	.	.	.	220	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	Y	V	T	G	V	Q	N	V	R	D	V	I	P	F	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	S	V	L	Q	G	K	N	S	N	F	E	I	D	I	I	F
Template Known Secondary structure							T	T		S	S	G	G	G	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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