Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 5 Aligned Residues 428 % Identity 38% Template c1x55A_ PDB info PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		M	S	V	V	P	V	A	D	V	L	Q	G	R	V	A	V	D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	.	.	L	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I	V	T	G
Query Conservation																																																											.	.
Alig confidence													.	.																				.															.	.									.	.
Template Conservation													.	.																				.															.	.
Template Sequence		I	E	K	V	Y	C	Q	E	V	K	P	.	.	E	L	D	G	K	K	V	R	L	A	G	W	V	Y	T	N	M	R	V	.	G	K	K	I	F	L	W	I	R	D	S	T	G	I	.	.	V	Q	A	V	V	A	K	N	V	V	G	E	E	T	F	E	K	A	K	K	L	G	R	E	S	S	V	I	V	E	G
Template Known Secondary structure							G	G	G			G	.	.	G	G	T	T																.	T	T									T	T			.	.																				T			T	T
Template Predicted Secondary structure													.	.																				.															.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	A	S	P	G	Q	G	Q	Q	F	E	I	Q	A	S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	M	A	A	K	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		I	V	K	A	D	E	R	A	P	G	G	A	E	V	H	V	E	K	L	E	V	I	Q	A	V	.	S	E	F	P	I	P	E	N	P	E	Q	A	S	P	E	L	L	L	D	Y	R	H	L	H	I	R	T	P	K	A	S	A	I	M	K	V	K	E	T	L	I	M	A	A	R	E	W	L	L	K	D	G	W	H
Template Known Secondary structure							T	T	S	G	G	G															.	S			S	S		S	S	G	G	G	S								T					T	T	S																								T	T
Template Predicted Secondary structure																											.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	F	P	P	I	L	V	T	G	A	V	E	G	G	A	T	L	F	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	F	D	K	Y	A	Y	L	S	Q	S	A	Q	L	Y	L	E	A	A	I	F	G	L	E	K	V	W	S	L	T	P	S	F	R	A	E	K	S
Template Known Secondary structure							S			S			S	S		G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S		S												S														S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T
Query Conservation
Alig confidence																																																										.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		R	T	R	R	H	L	T	E	F	W	H	L	E	L	E	A	A	W	M	D	L	W	D	I	M	K	V	E	E	E	L	V	S	Y	M	V	Q	R	T	L	E	L	R	K	K	E	I	E	M	F	R	D	D	L	T	T	.	.	.	.	.	.	L	K	N	T	E	P	P	F	P	R	I	S	Y	D	E	A	I	D
Template Known Secondary structure				T	T			S											T																															T	T		S					.	.	.	.	.	.			T			S	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																																		.																			.
Query SS confidence																																																		.																			.
Query Sequence		I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F	.	Y	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	.	P	G	I	G	E	I	I	G	G	S	Q	R
Query Conservation																																																		.																			.
Alig confidence												.	.	.	.														.																					.																			.
Template Conservation												.	.	.	.														.
Template Sequence		I	L	Q	S	K	G	V	N	V	E	.	.	.	.	W	G	D	D	L	G	A	D	E	E	R	V	L	.	T	E	E	F	D	R	P	F	F	V	Y	G	Y	P	K	H	I	K	A	F	Y	M	K	E	D	P	N	D	P	R	K	V	L	A	S	D	M	L	A	P	E	G	Y	G	E	I	I	G	G	S	Q	R
Template Known Secondary structure						T	T					.	.	.	.	T	T												.	G	G	G		S	S								B	G	G	G	S		T	T	B		B		S	S		T	T	B	B	S							T	T	T	T									B
Template Predicted Secondary structure												.	.	.	.														.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V	T	G	V	Q	N	V	R	D	V	I	P	F	P	R	T	P	R	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	D	Y	D	K	L	L	N	R	I	L	E	E	G	M	D	P	K	D	Y	E	W	Y	L	D	L	R	R	Y	G	S	V	P	H	S	G	F	G	L	G	V	E	R	L	V	A	W	V	L	K	L	D	H	I	R	W	A	A	L	F	P	R	T	P	A	R	L	Y
Template Known Secondary structure															T	T			G	G	G	G						T	T	T	S	S																			T	T		S		G	G	G	G	S	S	S			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.