Job Description P0A8M0 Confidence 98.79% Date Thu Jan 5 11:08:10 GMT 2012 Rank 65 Aligned Residues 131 % Identity 18% Template c1ggmB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (glycyl-trna synthetase); PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate Resolution 3.40 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	.	.	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	L	K	N	N	L	K	Q	A	W	W	R	R	N	V	Y	E	R	D	D	M	E	G	L	D	A	S	V	L	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	V	L	H	Y	S	G	H	E	A	T	F	A	D	P	M	V	D	N	A	K	A	R	Y	W	T	P	P	R	Y
Template Known Secondary structure																		T	S		S	S								S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	S	T	T	G	G	G		S		B				S	S	S							B
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70																		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
																	203	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	E	S	F	L	T	V	S	G	.	.	.	.	.	Q	L	N	G	E	T	Y	A	C	A	L	S	.	.	.	.	K	I	Y	T	F	G	P	T	F	R	A	E	.	.	.	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.													.	.	.	.													.	.	.								.										.
Template Conservation																																																																						.										.
Template Sequence		F	N	M	M	F	Q	D	L	R	G	P	R	G	G	R	G	L	L	A	Y	L	R	P	E	T	A	Q	G	I	F	V	N	F	K	N	V	L	D	A	T	S	R	K	L	G	F	G	I	A	Q	I	G	K	A	F	R	N	E	I	T	P	R	N	F	I	F	R	V	.	R	E	F	E	Q	M	E	I	E	.	Y
Template Known Secondary structure					S						S	S	S			G	G	G						S	S	T																			S	S														S	S		B	T	T	T	T	B		.	S									.
Template Predicted Secondary structure																																																																						.										.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.		.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	R	P	G	E	D	E	Y	W	H	R	Y	W	V	E	E	R	L	K	W	W	Q	E	M	G	L	S	R	E	N	L
Template Known Secondary structure					G	G	G																			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions