Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 11 Aligned Residues 434 % Identity 24% Template c1efwA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli Resolution 3.00 Å

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		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		M	S	V	V	.	P	V	A	D	V	L	Q	G	R	V	A	V	D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	L	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I	V	T	G	K
Query Conservation						.
Alig confidence						.										.	.																		.															.	.										.
Template Conservation																.	.																		.															.	.										.
Template Sequence		M	R	R	T	H	Y	A	G	S	L	R	E	T	H	.	.	V	G	E	E	V	V	L	E	G	W	V	N	R	R	R	D	L	.	G	G	L	I	F	L	D	L	R	D	R	E	G	L	.	.	V	Q	L	V	A	H	P	A	S	.	P	A	Y	A	T	A	E	R	V	R	P	E	W	V	V	R	A	K	G	L
Template Known Secondary structure					S	S		G	G	G			G	G	G	.	.	T	T																.	S	S									T	T			.	.							T	T	S	.											T	T
Template Predicted Secondary structure																.	.																		.															.	.										.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence								.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		V	V	A	S	P	G	.	.	.	.	.	Q	G	Q	Q	F	E	I	Q	A	S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	.	.	.	.	.	.	M	A	A	K	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L
Query Conservation								.	.	.	.	.																										.	.	.	.	.	.
Alig confidence								.	.	.	.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	L	R	P	E	P	N	P	R	L	A	T	G	R	V	E	V	E	L	S	A	L	E	V	L	A	E	A	K	T	P	P	F	P	V	D	A	G	W	R	G	E	E	E	K	E	A	S	E	E	L	R	L	K	Y	R	Y	L	D	L	R	R	R	R	M	Q	E	N	L	R	L	R	H	R	V	I	K	A	I
Template Known Secondary structure						S	S			T	T		T	T	T	T						S												S	S				G	G	G	G	T														T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	.	T	Y	A	C	A	L	S	K	I	Y
Query Conservation																																																																							.
Alig confidence																										.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																										.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	D	F	L	D	R	E	G	F	V	Q	V	E	T	P	F	L	T	K	S	T	P	E	G	.	A	R	D	F	L	V	P	Y	R	H	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	F	Y	A	L	P	Q	S	P	Q	L	F	K	Q	M	L	M	V	A	G	L	D	R	Y	F
Template Known Secondary structure								T	T								S	S	B				S	S	S	.	S								T	T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S		S										T	T
Template Predicted Secondary structure																										.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190																		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		T	F	G	P	T	F	R	A	E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																			.																																						.	.	.	.	.																.	.	.	.	.
Template Conservation																			.																																						.	.	.	.	.
Template Sequence		Q	I	A	R	C	F	R	D	E	D	L	R	A	D	R	Q	P	.	D	F	T	Q	L	D	L	E	M	S	F	V	E	V	E	D	V	L	E	L	N	E	R	L	M	A	H	V	F	R	E	A	L	G	V	E	L	.	.	.	.	.	P	L	P	F	P	R	L	S	Y	E	E	A	M	E	R	Y	G	S	D	K
Template Known Secondary structure										S				S	S			S	.											S																						T					.	.	.	.	.		S	S														S	S	S	S
Template Predicted Secondary structure																			.																																						.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
																																			303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	L	R	F	G	L	E	L	K	E	V	G	P	L	F	R	Q	S	G	F	R	V	F	Q	E	A	E	S	V	K	A	L	A	L	P	K	A	L	S	R	K	E	V	A	E	L	E	E	V	A	K	R	H	K	A	Q	G	L	A	W	A	R	V	E	E	G	G	F	S	G	G	V	A	K	F	L	E	P	V
Template Known Secondary structure				T	T	S						B		G	G	G	G	T	T		S						T		S								S	S																	S	S		S									T	T				S	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
																															333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360													.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	K	D	I	K	A	F	Y	M	R	L	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	A	L	L	Q	A	T	E	A	R	P	G	D	T	L	L	F	V	A	G	P	R	K	V	A	A	T	A	L	G	A	V	R	L	R	A	A	D	L	L	G	L	K	R	E	G	F	R	F	L	W	V	V	D	F	P	L	L	E	W	D	E	E	E	E	A	W	T	Y	M	H	H	P	F	T	S	P	H	P
Template Known Secondary structure										T			T	T									S																				T					S										B	S						S	S		S				S	S		T	T	B		B		T
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		372	.	.	.	.										.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.					.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence		E	D	G	K	T	.	.	.	.	.	.	.	.	.	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	.	.	.	.	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F
Query Conservation							.	.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.												.																													.	.	.	.
Template Conservation																											.
Template Sequence		E	D	L	P	L	L	E	K	D	P	G	R	V	R	A	L	A	Y	D	L	V	L	N	G	V	.	E	V	G	G	G	S	I	R	I	H	D	P	R	L	Q	A	R	V	F	R	L	L	G	I	G	E	E	E	Q	R	E	K	F	G	F	F	L	E	A	L	E	Y	G	A	P	P	H	G	G	I	A	W	G	L
Template Known Secondary structure		T	T	T	T						S	S	S		B	B	S	B						T	T		.						B	B	B			S											T	T																	G	G	G	T			S
Template Predicted Secondary structure																											.
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	I	A	Y	V	T	G	V	Q	N	V	R	D	V	I	P	F	P	R	T	P	R	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	L	A	L	M	T	G	S	P	S	I	R	E	V	I	A	F	P	K	N	K	E	G	K	D
Template Known Secondary structure										T		S	S	G	G	G	G	S	S	S				T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.