Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 4 Aligned Residues 430 % Identity 31% Template c1b8aB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Resolution 1.90 Å

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		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure						.																																																							.	.
Query SS confidence						.																																																							.	.
Query Sequence		M	S	V	V	.	P	V	A	D	V	L	Q	G	R	V	A	V	D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	L	.	.	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I	V	T
Query Conservation						.																																																							.	.
Alig confidence						.							.	.																					.															.	.										.	.
Template Conservation													.	.																					.															.	.
Template Sequence		M	Y	R	T	H	Y	S	S	E	I	T	.	.	E	E	L	N	G	Q	K	V	K	V	A	G	W	V	W	E	V	K	D	L	.	G	G	I	K	F	L	W	I	R	D	R	D	G	I	.	.	V	Q	I	T	A	P	K	K	K	V	D	P	E	L	F	K	L	I	P	K	L	R	S	E	D	V	V	A	V	E
Template Known Secondary structure					S			G	G	G			.	.	G	G	G	T	T																.	S	S									T	T			.	.							G	G	G	S								G	G	G			T	T
Template Predicted Secondary structure													.	.																					.															.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.			.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.		.	.	.	.	.	.	.	.	1040	.	.	.	.	.			.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		G	K	V	V	A	S	P	G	Q	G	Q	Q	F	E	I	Q	A	S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	M	A	A	K	.	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	R	T	N	L	I	G	A	V	A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G
Query Conservation																																							.
Alig confidence																																							.
Template Conservation
Template Sequence		G	V	V	N	F	T	P	K	A	K	L	G	F	E	I	L	P	E	K	I	V	V	L	N	R	A	E	T	P	L	P	L	D	P	T	G	K	V	K	A	E	L	D	T	R	L	N	N	R	F	M	D	L	R	R	P	E	V	M	A	I	F	K	I	R	S	S	V	F	K	A	V	R	D	F	F	H	E	N	G
Template Known Secondary structure								T	T	S	T	T	S																S	S		S	S		T	T	S	S	S										T					T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		1076	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E	.	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A
Query Conservation																																																															.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	E	I	H	T	P	K	I	I	A	T	A	T	E	G	G	T	E	L	F	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	F	E	E	D	A	F	L	A	E	S	P	Q	L	Y	K	E	I	M	M	A	S	G	L	D	R	V	Y	E	I	A	P	I	F	R	A
Template Known Secondary structure									S							S	S			S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S		S							G	G	G	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1156	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.																					.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	.	A	N	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F	A	E	R	V	D	K	D	A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T
Query Conservation																							.
Alig confidence																							.																																							.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.
Template Sequence		E	E	H	N	T	T	R	H	L	N	E	A	W	S	I	D	S	E	M	A	F	I	E	D	E	E	E	V	M	S	F	L	E	R	L	V	A	H	A	I	N	Y	V	R	E	H	N	A	K	E	L	D	I	L	N	F	E	L	E	E	.	.	.	.	.	.	.	.	.	P	K	L	P	F	P	R	V	S	Y	D
Template Known Secondary structure			S	S			T	T			S											S		S	S																														T	T						.	.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		1216	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.										.	.	.	.	1280	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F	Y	.	M	R	L	N	E	D	G	K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G
Query Conservation																																																							.
Alig confidence																																																							.																					.
Template Conservation																																																																												.
Template Sequence		K	A	L	E	I	L	G	D	L	G	K	E	I	P	W	G	E	D	I	D	T	E	G	E	R	L	L	G	K	Y	M	M	E	N	E	N	A	P	L	Y	F	L	Y	Q	Y	P	S	E	A	K	P	F	Y	I	M	K	Y	D	N	K	P	E	I	C	R	A	F	D	L	E	Y	R	G	V	.	E	I	S	S	G
Template Known Secondary structure										T	T					T	T	S																					S						S		B	G	G	G	S		T	T	B				T	T						S							T	T		.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		1287	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360		.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V	T	G	V	Q	N	V	R	D	V	I	P	F	P	R	T	P	R	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	R	E	H	R	H	D	I	L	V	E	Q	I	K	E	K	G	L	N	P	E	S	F	E	F	Y	L	K	A	F	R	Y	G	M	P	P	H	G	G	F	G	L	G	A	E	R	L	I	K	Q	M	L	D	L	P	N	I	R	E	V	I	L	F	P	R	D	R	R	R	L	T
Template Known Secondary structure				B														T	T			G	G	G	G					G	G	G	S	S																				T	T		S		G	G	G	S	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		1366	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.