Job Description P0A8M0 Confidence 100.00% Date Thu Jan 5 11:08:10 GMT 2012 Rank 3 Aligned Residues 438 % Identity 24% Template c1asyA_ PDB info PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		M	S	V	V	P	V	A	D	V	L	Q	G	R	V	A	V	D	S	E	V	T	V	R	G	W	V	R	T	R	R	D	S	K	A	G	I	S	F	L	A	V	Y	D	G	S	C	F	D	P	V	Q	A	V	I	N	N	S	L	.	.	.	.	.	P	N	Y	N	E	D	V	L	R	L	T	T	G	C	S	V	I
Query Conservation																																																												.	.	.	.	.
Alig confidence															.																																		.	.										.	.	.	.	.
Template Conservation															.																																		.	.
Template Sequence		Q	K	R	V	K	F	V	D	L	D	E	A	K	.	D	S	D	K	E	V	L	F	R	A	R	V	H	N	T	R	Q	Q	G	A	T	L	A	F	L	T	L	R	Q	Q	A	S	L	.	.	I	Q	G	L	V	K	A	N	K	E	G	T	I	S	K	N	M	V	K	W	A	G	S	L	N	L	E	S	I	V	L
Template Known Secondary structure							G	G	G			S	S	S	.	S	S	S																	T	T								S	S	S			.	.									T	T	S	S	S										T			T	T
Template Predicted Secondary structure															.																																		.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.														.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	G	K	V	V	A	S	P	G	.	.	.	.	.	Q	G	Q	Q	F	E	I	Q	A	S	K	V	E	V	A	G	W	V	E	D	P	D	T	Y	P	M	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	H	S	I	E	Y	L	R	E	V	A	H	L	R	P	R	T	N	L	I	G	A	V
Query Conservation												.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	G	I	V	K	K	V	D	E	P	I	K	S	A	T	V	Q	N	L	E	I	H	I	T	K	I	Y	T	I	S	E	T	P	E	A	L	P	I	L	L	E	D	A	S	R	S	E	A	E	A	E	A	A	G	L	P	V	V	N	L	D	T	R	L	D	Y	R	V	I	D	L	R	T	V	T	N	Q	A	I
Template Known Secondary structure										S	S			S	S		S	S	T	T																S			S	S							S							T	T	S												T					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	V	R	H	T	L	A	Q	A	L	H	R	F	F	N	E	Q	G	F	F	W	V	S	T	P	L	I	T	A	S	D	T	E	G	A	G	E	M	F	R	V	S	T	L	D	L	E	N	L	P	R	N	D	Q	G	K	V	D	F	D	K	D	F	F	G	K	E	S	F	L	T	V	S	G	Q	L	N	G	E
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	I	Q	A	G	V	C	E	L	F	R	E	Y	L	A	T	K	K	F	T	E	V	H	T	P	K	L	L	G	A	P	S	E	G	G	S	S	V	F	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	F	K	G	K	A	Y	L	A	Q	S	P	Q	F	N	K	Q
Template Known Secondary structure																			T	T								S			S	S		S	T	T	T	T	S			B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	T	T	B						S		S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
			218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.																																										.
Query SS confidence		.																																										.
Query Sequence		.	T	Y	A	C	A	L	S	K	I	Y	T	F	G	P	T	F	R	A	E	N	S	N	T	S	R	H	L	A	E	F	W	M	L	E	P	E	V	A	F	A	N	.	L	N	D	I	A	G	L	A	E	A	M	L	K	Y	V	F	K	A	V	L	E	E	R	A	D	D	M	K	F	F	A	E	R	V	D	K	D
Query Conservation		.																																										.
Alig confidence		.																																										.
Template Conservation
Template Sequence		Q	L	I	V	A	D	F	E	R	V	Y	E	I	G	P	V	F	R	A	E	N	S	N	T	H	R	H	M	T	E	F	T	G	L	D	M	E	M	A	F	E	E	H	Y	H	E	V	L	D	T	L	S	E	L	F	V	F	I	F	S	E	L	P	K	R	F	A	H	E	I	E	L	V	R	K	Q	Y	P	V	E
Template Known Secondary structure						T	T														S					S	S			S	S											S	S		T																															T	T	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		A	V	S	R	L	E	R	F	I	E	A	D	F	A	Q	V	D	Y	T	D	A	V	T	I	L	E	N	C	G	R	K	F	E	N	P	V	Y	W	G	V	D	L	S	S	E	H	E	R	Y	L	A	E	E	H	F	K	A	P	V	V	V	K	N	Y	P	K	D	I	K	A	F	.	Y	M	R	L	N	E	D	G
Query Conservation																																																																									.
Alig confidence					.	.	.																																																																		.
Template Conservation					.	.	.
Template Sequence		E	F	K	.	.	.	L	P	K	D	G	K	M	V	R	L	T	Y	K	E	G	I	E	M	L	R	A	A	G	K	E	I	G	D	F	E	D	L	S	T	E	N	E	K	F	L	G	K	L	V	R	D	K	Y	D	T	D	F	Y	I	L	D	K	F	P	L	E	I	R	P	F	Y	T	M	P	D	P	A	N	P
Template Known Secondary structure					.	.	.			S	S	S																	T	T					S	S	S																					S								B	T	T	S	S		T	T	B		B		S	S		T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		388	.	390				.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.			.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		K	T	V	A	A	M	D	V	L	A	P	G	I	G	E	I	I	G	G	S	Q	R	E	E	R	L	D	V	L	D	E	R	M	L	E	M	G	L	N	K	E	D	.	.	Y	W	W	Y	R	D	L	R	R	Y	G	T	V	P	H	S	G	F	G	L	G	F	E	R	L	I	A	Y	V	T	G	V	Q	N	V	R
Query Conservation																																												.	.
Alig confidence															.																													.	.
Template Conservation															.
Template Sequence		K	Y	S	N	S	Y	D	F	F	M	R	G	E	.	E	I	L	S	G	A	Q	R	I	H	D	H	A	L	L	Q	E	R	M	K	A	H	G	L	S	P	E	D	P	G	L	K	D	Y	C	D	G	F	S	Y	G	C	P	P	H	A	G	G	G	I	G	L	E	R	V	V	M	F	Y	L	D	L	K	N	I	R
Template Known Secondary structure		T	B	B	S							T	T		.																						T	T			T	T	S									T	T	T	T																					T		S		G	G
Template Predicted Secondary structure															.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	I	P	F	P	R	T	P	R	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	S	L	F	P	R	D	P	K	R	L	R
Template Known Secondary structure		G	G	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.