Phyre 2 alignment of P17109 with c3dm5A

Job Description P17109
Confidence 80.76% Date Thu Jan 5 11:35:57 GMT 2012

Rank 134 Aligned Residues 67

% Identity 10% Template c3dm5A_

PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.

Resolution 2.51 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence	R	D	W	F	F	W	R	Q	K	R	G	V	V	V	A	G	R	M	.	S	A	E	E	G	K	K	V	A	L	W	A	Q	T	L	G	W	P	L	I	G	D	V	L	S	Q	T	G	Q	P	L	P	C	A	D	L	W	L	G	N	A	K	A	T	S	E	L	Q	Q	A	Q	I	V	V	Q
Query Conservation																			.
Alig confidence																			.																				.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	.	.	.	.	.	.	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V
Template Known Secondary structure						T	T	T											S	S	T											G	G	G	T				.	.	.	.	.	.				T	T																		T	T		S
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
	121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions