Job Description P17109 Confidence 100.00% Date Thu Jan 5 11:35:57 GMT 2012 Rank 20 Aligned Residues 510 % Identity 14% Template c2vbgB_ PDB info PDB header:lyase Chain: B: PDB Molecule:branched-chain alpha-ketoacid decarboxylase; PDBTitle: the complex structure of the branched-chain keto acid2 decarboxylase (kdca) from lactococcus lactis with 2r-1-3 hydroxyethyl-deazathdp Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	A	A	V	I	L	E	A	L	T	R	H	G	V	R	H	I	C	I	A	P	G	S	R	S	T	P	L	T	L	A	A	A	E	N	S	A	F	I	H	H	T	H	F	D	E	R	G	L	G	H	L	A	L	G	L	A	K	V	S	K	Q	P	V	A	V	I	V	T	S	G	T	A	V	A	N	L	Y	P
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		T	V	G	D	Y	L	L	D	R	L	H	E	L	G	I	E	E	I	F	G	V	P	G	D	Y	N	L	Q	F	L	D	Q	I	I	S	R	E	D	M	K	W	I	G	N	A	N	E	L	N	A	S	Y	M	A	D	G	Y	A	R	.	T	K	K	A	A	A	F	L	T	T	F	G	V	G	E	L	S	A	I	N
Template Known Secondary structure		B												T	T										G	G	G											S	S							S	S														.			S								T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.
Query Sequence		A	L	I	E	A	G	L	T	G	E	K	L	I	L	L	T	A	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	.	.	.	.	.	.	.	.	R	Q	P	G	M	F	A	S	H	P	T	H	S	I	S	L	P	R	P	T	Q	D	I	P	A	R	W	L	V	S	T	I	D	H	A	L	G	T	L	H
Query Conservation																																		.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.																		.								.	.	.
Template Conservation																																																											.								.	.	.
Template Sequence		G	L	A	G	S	Y	A	E	N	L	P	V	V	E	I	V	G	S	P	T	S	K	V	Q	N	D	G	K	F	V	H	H	T	L	A	D	G	D	F	K	H	F	M	K	M	H	E	P	V	T	A	A	R	T	L	L	T	.	A	E	N	A	T	Y	E	.	.	.	I	D	R	V	L	S	Q	L	L	K	E	R
Template Known Secondary structure									T	T																	T	T				T	T	S		S	S	S									T	G	G	G		S							.	T	T	T					.	.	.
Template Predicted Secondary structure																																																											.								.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		A	G	G	V	H	I	N	C	P	F	A	E	P	L	Y	G	E	M	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q	K	R	G	V	V	V	A	G	R	M	.	.	S	A	E	E	G	K	K	V	A
Query Conservation																																																																							.	.
Alig confidence		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Template Conservation		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	K	P	V	Y	I	N	L	P	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	A	A	K	A	E	K	P	A	L	S	L	E	N	T	T	E	Q	V	I	L	S	K	I	E	E	S	L	K	N	A	Q	K	P	V	V	I	A	G	H	E	V	I	S	F	G	L	E	K	T	V	T
Template Known Secondary structure		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	S	B					S	S																						S	S												T	T
Template Predicted Secondary structure		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			158	.	160	.	.	.	.	.	.	.																	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		L	W	A	Q	T	L	G	W	P	L	I	G	D	V	L	S	Q	T	G	Q	P	L	P	C	.	.	.	.	.	.	A	D	L	W	L	G	N	A	K	A	T	S	E	L	Q	Q	A	Q	I	V	V	Q	L	G	S	S	L	T	G	K	R	L	L	Q	W	Q	A	S	C	E	P	E	E	Y	W	I	V	D	D	I
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	V	S	E	T	K	L	P	I	T	T	L	N	F	G	K	S	A	V	D	E	S	L	P	S	F	L	G	I	Y	N	G	K	L	S	E	I	S	L	K	N	F	V	E	S	A	D	F	I	L	M	L	G	V	K	L	T	D	S	S	T	G	A	F	T	H	H	L	D	E	N	K	M	I	S	L	N	I	D
Template Known Secondary structure								T							S	T	T	T	T	S	S		T	T	S	T	T							G	G	G	S												S						S					G	G	G	T	T	T	T						G	G	G						S	S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	R	L	D	P	A	H	H	R	G	R	R	L	I	A	N	I	A	D	W	L	E	L	H	P	A	E	K	R	Q	P	W	C	V	E	I	P	R	L	A	E	Q	A	M	Q	A	V	I	A	R	R	D	A	F	G	E	A	Q	L	A	H	R	I	C	D	Y	L	P	E	Q	G	Q	L	F	V	G	N	S	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		E	G	I	I	F	N	K	V	V	E	D	F	D	F	R	A	V	V	S	S	L	S	E	L	K	G	I	E	Y	E	G	Q	Y	.	.	.	.	.	.	.	.	.	I	D	K	E	E	F	I	P	S	S	A	P	L	S	Q	D	R	L	W	Q	A	V	E	S	L	T	Q	S	N	E	T	I	V	A	E	Q	G	T
Template Known Secondary structure						T	T					S	S							T	T	G	G	G			S					S			.	.	.	.	.	.	.	.	.										S	S	B																S	S							T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.										340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	V	R	L	I	D	A	L	S	Q	L	P	A	G	Y	P	V	Y	S	N	R	G	A	S	G	I	D	G	L	L	S	T	A	A	G	V	Q	R	A	.	S	G	K	P	T	L	A	I	V	G	D	L	S	A	L	Y	D	L	N	A	L	A	L	L	R	Q	V	S	A	P	L	V	L	I	V	V	N	N	N	G
Query Conservation																																									.
Alig confidence											.																														.
Template Conservation											.
Template Sequence		S	F	F	G	A	S	T	I	F	.	L	K	S	N	S	R	F	I	G	Q	P	L	W	G	S	I	G	Y	T	F	P	A	A	L	G	S	Q	I	A	D	K	E	S	R	H	L	L	F	I	G	D	G	S	L	Q	L	T	V	Q	E	L	G	L	S	I	R	E	K	L	N	P	I	C	F	I	I	N	N	D	G
Template Known Secondary structure							T	T	S		.			T	T							T	T	T			T	T	T													T	T	S															G	G	G							T	T										S	S	S
Template Predicted Secondary structure											.
Template SS confidence
		380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510						.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																	.
Query SS confidence																																									.	.	.	.	.																	.
Query Sequence		G	Q	I	F	S	L	L	P	T	P	Q	S	E	R	E	R	F	Y	L	M	P	Q	N	V	H	F	E	H	A	A	A	M	F	E	L	K	Y	H	R	.	.	.	.	.	P	Q	N	W	Q	E	L	E	T	A	F	A	D	A	W	R	.	T	P	T	T	T	V	I	E	M	V	V	N	D	T	D	G	A	Q	T
Query Conservation																																									.	.	.	.	.																	.
Alig confidence										.	.	.	.																												.	.	.	.	.																	.
Template Conservation										.	.	.	.
Template Sequence		Y	T	V	E	R	E	I	H	.	.	.	.	G	P	T	Q	S	Y	N	D	I	P	M	W	N	Y	S	K	L	P	E	T	F	G	A	T	E	D	R	V	V	S	K	I	V	R	T	E	N	E	F	V	S	V	M	K	E	A	Q	A	D	V	N	R	M	Y	W	I	E	L	V	L	E	K	E	D	A	P	K	L
Template Known Secondary structure									S	.	.	.	.		T	T		G	G	G							G	G	G					T	T			T	T	T								B															T	T	S										T	T
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		459	460	.	.	.	.	.	.					.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		546	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	L	L	A	Q	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	K	M	G	K	L	F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		535	.	.	.	.	540	.	.	.