Job Description P17109 Confidence 69.31% Date Thu Jan 5 11:35:57 GMT 2012 Rank 152 Aligned Residues 185 % Identity 16% Template c2d6fA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Resolution 3.15 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.								.	.	.	.	140
Predicted Secondary structure																				.																																						.	.	.	.	.	.							.	.	.	.	.	.	.
Query SS confidence																				.																																						.	.	.	.	.	.							.	.	.	.	.	.	.
Query Sequence		V	I	V	T	S	G	T	A	V	A	N	L	Y	P	A	L	I	E	.	A	G	L	T	G	E	K	L	I	L	L	T	A	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	R	Q	P	G	M	F	A	S	H	.	.	.	.	.	.	P	T	H	S	I	S	.	.	.	.	.	.	.	L	P	R	P	T
Query Conservation																				.																																						.	.	.	.	.	.							.	.	.	.	.	.	.
Alig confidence																				.																																						.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	V	A	H	G	T	D	T	M	H	Y	T	S	A	A	L	S	F	M	L	R	T	P	V	P	V	V	F	T	G	A	Q	R	S	S	D	R	P	S	S	D	A	S	L	N	I	Q	C	S	V	R	A	A	T	S	E	I	A	E	V	T	V	C	M	H	A	T	M	D	D	L	S	C	H	L	H	R	G	V
Template Known Secondary structure								T	T	T															S	S								S	S		T	T	S	T	T		T														S	S			S							S	S	S	S	S	S							G	G
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	I	P	A	R	W	L	V	S	T	I	D	H	A	L	G	T	L	H	A	G	G	V	H	I	N	C	P	F	A	E	P	L	Y	G	E	M	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q	K
Query Conservation
Alig confidence							.	.	.																																																													.
Template Conservation							.	.	.																																																													.
Template Sequence		K	V	R	K	M	.	.	.	H	T	S	R	R	D	T	F	R	S	M	N	A	L	P	L	A	E	V	T	P	D	G	I	K	I	L	E	E	N	Y	R	K	R	G	S	D	E	L	E	L	S	D	R	V	E	E	R	V	A	F	I	K	S	Y	P	G	I	S	P	.	D	I	I	K	W	H	L	D	E	G	Y
Template Known Secondary structure		G					.	.	.	S	S	S		T	T					S	S	S			S					T	T												S	T	T	S																			T	T				.									T	T
Template Predicted Secondary structure							.	.	.																																																													.
Template SS confidence
		251	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		R	G	V	V	V	A	G	R	M	.	.	.	.	S	A	E	E	G	K	K	V	A	L	W	A	Q	T	L	G	W	P	L	I	G	D	V	L	S	Q	T	G	Q	P	L	P	C	A	D
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.															.
Template Conservation																													.
Template Sequence		R	G	I	V	I	E	G	T	G	L	G	H	C	P	D	T	L	I	P	V	I	G	E	A	H	D	M	.	G	V	P	V	A	M	T	S	Q	C	L	N	G	R	V	N	M	N	V	Y
Template Known Secondary structure		S							B	T	T	T	B			G	G	G										T	.	T								T	T		S	S				T	T	S	S
Template Predicted Secondary structure																													.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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