Job Description P17109 Confidence 96.98% Date Thu Jan 5 11:35:57 GMT 2012 Rank 96 Aligned Residues 225 % Identity 12% Template c2bp7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) Resolution 2.9 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																	.										.
Query SS confidence																										.	.	.	.																	.										.
Query Sequence		A	F	N	R	R	W	A	A	V	I	L	E	A	L	T	R	H	G	V	R	H	I	C	I	.	.	.	.	A	P	G	S	R	S	T	P	L	T	L	A	A	A	E	N	.	S	A	F	I	H	H	T	H	F	.	D	E	R	G	L	G	H	L	A	L	G	L	A	K	V	S	K	Q	P	V	A	V	I	V	T
Query Conservation																										.	.	.	.																	.										.
Alig confidence																										.	.	.	.																	.			.							.																				.
Template Conservation																																																	.																											.
Template Sequence		T	M	I	Q	A	L	R	S	A	M	D	V	M	L	E	R	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	Q	T	K	Y	G	K	S	.	R	V	F	D	A	P	I	S	E	S	G	I	V	G	T	A	V	G	M	G	A	Y	G	L	R	P	.	V	V	E	I	Q
Template Known Secondary structure																			T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	.	T						S																T				.					S
Template Predicted Secondary structure																																																	.																											.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		S	G	T	A	V	A	N	L	Y	P	A	L	I	E	A	G	L	.	.	.	.	.	.	.	.	.	T	G	E	K	L	I	L	L	T	A	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	R	Q	P	G	M	F	A	S	H	P	T	H	S	I	S	L	P	R	P	T	Q	D	I	P	A	R	W	L	V
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																.	.																				.	.
Template Conservation																																											.	.																				.	.
Template Sequence		F	A	D	Y	F	Y	P	A	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	G	G	G	I	.	.	Y	G	G	Q	T	H	S	Q	S	P	E	A	M	F	T	Q	V	C	G	.	.	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L
Template Known Secondary structure			G	G	G		G	G	G						T	T	T	T	T					T	T	T	S	S													S	S	.	.	S			T	T	S	S				T					T	S	T	T	.	.								S
Template Predicted Secondary structure																																											.	.																				.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	I	D	H	A	L	G	T	L	H	A	G	G	V	H	I	N	C	P	F	A	E	P	L	Y	G	E	M	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q	K	R	G	V	V	V	A	G	R	M
Query Conservation
Alig confidence							.	.	.	.	.																																																	.	.	.	.	.															.	.	.
Template Conservation							.	.	.	.	.																																																	.	.	.	.	.															.	.	.
Template Sequence		I	A	S	I	E	.	.	.	.	.	C	D	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	K	.	.	.	.	.	A	A	I	T	R	P	G	N	D	V	S	V	L	T	.	.	.
Template Known Secondary structure							.	.	.	.	.		S	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T		.	.	.	.	.								S	S						.	.	.
Template Predicted Secondary structure							.	.	.	.	.																																																	.	.	.	.	.															.	.	.
Template SS confidence
		161	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	E	E	G	K	K	V	A	L	W	A	Q	T	L	G	W	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	T	T	V	Y	V	A	Q	V	A	A	E	E	S	G	V	D	A
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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