Job Description P17109 Confidence 74.63% Date Thu Jan 5 11:35:57 GMT 2012 Rank 147 Aligned Residues 186 % Identity 11% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.														.	.	.	.	.	.	.	.
Predicted Secondary structure																				.					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	V	T	S	G	T	A	V	A	N	L	Y	P	A	L	I	E	.	A	G	L	T	.	G	E	K	L	I	L	L	T	A	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	R	Q	P	G	M	F	A	S	H	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	I	S	L	P	R	P
Query Conservation																				.					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.					.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	V	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	R	S	S	D	R	P	S	S	D	A	A	X	N	L	I	C	S	V	R	X	A	T	S	E	V	A	E	V	X	V	V	X	H	G	E	T	G	D	T	Y	C	L	A	H	R	G
Template Known Secondary structure								T	T	T												S	B	T			S								S	S		T	T	S	T	T		S													T	S	S	B		S							S	S	S	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	D	I	P	A	R	W	L	V	S	T	I	D	H	A	L	G	T	L	H	A	G	G	V	H	I	N	C	P	F	A	E	P	L	Y	G	E	M	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q
Query Conservation
Alig confidence																																																																												.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		T	K	V	R	K	X	H	T	S	R	R	D	A	F	R	S	I	N	D	V	P	I	A	K	I	W	P	N	G	E	I	E	F	L	R	K	D	Y	R	K	R	S	D	E	E	V	E	V	D	D	K	I	E	E	K	V	A	L	V	K	V	Y	P	G	I	S	S	E	I	I	D	F	L	V	.	.	.	D	K	G
Template Known Secondary structure		T	S					S	S	S		G	G	G				S	S	S			S					T	T	S					S		S		S		B			S				B																S	S			T								.	.	.		T	T
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.
		220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		K	R	G	V	V	V	A	G	R	M	.	.	.	.	S	A	E	E	G	K	K	V	A	L	W	A	Q	T	L	G	W	P	L	I	G	D	V	L	S	Q	T	G	Q	P	L	P	C	A	D
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.															.
Template Conservation																														.
Template Sequence		Y	K	G	I	V	I	E	G	T	G	L	G	H	T	P	N	D	I	I	P	S	I	E	R	A	V	E	E	.	G	V	A	V	C	X	T	S	Q	C	I	Y	G	R	V	N	L	N	V	Y
Template Known Secondary structure			S							B	T	T	T	B			T	T	T										T	.	T								S	S	S	S	S				T	T	S	S
Template Predicted Secondary structure																														.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions