Job Description P17109 Confidence 96.45% Date Thu Jan 5 11:35:57 GMT 2012 Rank 98 Aligned Residues 213 % Identity 12% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.																.	.
Query SS confidence																											.	.	.	.	.																.	.
Query Sequence		A	F	N	R	R	W	A	A	V	I	L	E	A	L	T	R	H	G	V	R	H	I	C	I	A	.	.	.	.	.	P	G	S	R	S	T	P	L	T	L	A	A	A	E	N	.	.	S	A	F	I	H	H	T	H	F	D	E	R	G	L	G	H	L	A	L	G	L	A	K	V	S	K	Q	P	V	A	V	I	V
Query Conservation																											.	.	.	.	.																.	.
Alig confidence																			.	.							.	.	.	.	.																.	.																									.
Template Conservation																			.	.																																																					.
Template Sequence		T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	.	.	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	A	.	G	L	R	P	I	C	E	F
Template Known Secondary structure																			.	.	T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	.	T
Template Predicted Secondary structure																			.	.																																																					.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.										.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		T	S	G	T	A	V	A	N	L	Y	P	A	L	I	E	A	G	L	.	.	.	.	.	.	.	.	.	T	G	E	K	L	I	L	L	T	A	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	R	Q	P	G	M	F	A	S	H	P	T	H	S	I	S	L	P	R	P	T	Q	D	I	P	A	R	W	L
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.																.	.																									.	.
Template Conservation																																												.	.																									.	.
Template Sequence		X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	.	.	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	.	.	P	W	N	S	E	D	A	K	G	L
Template Known Secondary structure		S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	.	.	S			G	G	G										T	S	T	T						.	.			S
Template Predicted Secondary structure																																												.	.																									.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		V	S	T	I	D	H	A	L	G	T	L	H	A	G	G	V	H	I	N	C	P	F	A	E	P	L	Y	G	E	M	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q	K	R	G	V	V	V	A	.	G
Query Conservation																																																																																.
Alig confidence								.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation								.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	S	A	I	R	.	.	.	.	.	D	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	Q	G	T	H	I	T	V	V	S	H	S
Template Known Secondary structure								.	.	.	.	.	S	S	S								T	T	T	T	T											S	T	T					T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S							S
Template Predicted Secondary structure								.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																			.	.	.	.	.	.	.	.	.	210	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	S	A	E	E	G	K	K	V	A	L	W	A	Q	T	L	G	W	P	L
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		R	P	V	G	H	C	L	E	A	A	A	V	L	S	K	E	.	G	V	E	C
Template Known Secondary structure		T															T	.	T
Template Predicted Secondary structure																		.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions