Phyre 2 alignment of P31133 with d3thia

Job Description P31133
Confidence 100.00% Date Thu Jan 5 11:47:16 GMT 2012

Rank 46 Aligned Residues 322

% Identity 14% Template d3thia_

SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure													.	.	.	.	.												.
Query SS confidence													.	.	.	.	.												.
Query Sequence	T	L	H	I	Y	N	W	S	D	Y	I	A	.	.	.	.	.	P	D	T	V	A	N	F	E	K	E	T	.	G	I	K	V	V	Y	D	V	F	D	S	N	E	V	L	E	G	K	L	M	A	G	S	T	G	F	D	L	V	V	P	S	A	S	F	L	E	R	Q	L	T	A	G	V	F	Q	P	L	D	K	S
Query Conservation													.	.	.	.	.												.
Alig confidence													.	.	.	.	.												.														.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence	T	L	K	V	A	I	Y	P	Y	V	P	D	P	A	R	F	Q	A	A	V	L	D	Q	W	Q	R	Q	E	P	G	V	K	L	E	F	T	D	W	D	S	Y	S	.	.	.	.	.	.	A	D	P	P	D	D	L	D	V	F	V	L	D	S	I	F	L	S	H	F	V	D	A	G	Y	L	L	P	F	G	S	Q
Template Known Secondary structure								S		S	S																		T	T	S									T	T	T	.	.	.	.	.	.					T	T								G	G	G							T	T					B		G	G
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence	K	L	P	E	W	K	N	L	D	P	E	L	L	K	L	V	A	K	H	D	P	D	N	K	F	A	M	P	Y	M	W	A	T	T	G	I	G	Y	N	V	D	K	V	K	A	V	L	G	E	N	A	P	V	D	S	W	D	L	I	L	K	P	E	N	L	E	K	L	K	S	C	G	V	S	F	L	D	A	.	.
Query Conservation																																																																															.	.
Alig confidence																			.	.																														.																													.	.
Template Conservation																			.	.																														.
Template Sequence	D	I	D	Q	A	E	D	V	L	P	F	A	L	Q	G	A	K	R	.	.	N	G	E	V	Y	G	L	P	Q	I	L	C	T	N	L	L	F	Y	R	K	G	D	L	K	I	G	Q	V	D	.	N	I	Y	E	L	Y	K	K	I	G	T	S	H	S	E	Q	I	P	P	P	Q	N	K	G	L	L	I	N	M	A
Template Known Secondary structure	G		T	T	G	G	G	B								T			.	.	T	T																		T	T						T			.	B																S	S
Template Predicted Secondary structure																			.	.																														.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

					183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.								.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure	.	.	.	.																					.	.	.	.	.	.	.																.	.	.	.	.	.
Query SS confidence	.	.	.	.																					.	.	.	.	.	.	.																.	.	.	.	.	.
Query Sequence	.	.	.	.	P	E	E	V	F	A	T	V	L	N	Y	L	G	K	D	P	N	S	T	K	.	.	.	.	.	.	.	A	D	D	Y	T	G	P	A	T	D	L	L	L	K	L	.	.	.	.	.	.	R	P	N	I	R	Y	F	H	S	S	Q	Y	I	N	D	L	A	N	G	D	I	C	V	A	I	G	W	A
Query Conservation	.	.	.	.																					.	.	.	.	.	.	.																.	.	.	.	.	.
Alig confidence	.	.	.	.																					.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation
Template Sequence	G	G	T	T	K	A	S	M	Y	L	E	A	L	I	D	V	T	G	Q	Y	T	E	Y	D	L	L	P	P	L	D	P	L	N	D	K	V	I	R	G	L	R	L	L	I	N	M	A	G	E	K	P	S	Q	Y	V	P	E	D	G	D	A	Y	V	R	A	S	W	F	A	Q	G	S	G	R	A	F	I	G	Y	S
Template Known Secondary structure	S																	T						S	S				S	S	S																										T	T			T	T									T	B								T
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	D	V	W	Q	A	S	N	R	A	K	E	A	K	N	G	V	N	V	S	F	S	I	P	K	E	G	A	M	A	F	F	D	V	F	A	M	P	A	D	A	K	N	K	D	E	A	Y	Q	F	L	N	Y	L	L	R	P	D	V	V	A	H	I	S	D	H	V	F	Y	A	N	A	N	K	A	A	T	P	L	V
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence	E	S	M	M	R	M	G	D	Y	A	E	Q	V	.	R	F	K	P	I	S	S	S	A	G	Q	D	I	P	L	F	Y	S	D	V	V	S	V	N	S	K	T	A	H	P	E	L	A	K	K	L	A	N	V	M	A	S	A	D	T	V	E	Q	A	L	R	P	Q	A	D	G	Q	Y	P	Q	Y	L	L	P	A	R
Template Known Secondary structure	T						G	G	G	G	G	T		.						B	S		S	S															T	T		S														S									S			S	T	T									S	B
Template Predicted Secondary structure														.
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.						.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence	S	A	E	V	R	E	N	P	G	I	Y	P	P	A	D	V	R	A	K	L	F	T	L	K	V	Q	.	.	.	.	.	D	P	K	I	D	R	V	R	T	R	A
Query Conservation																											.	.	.	.	.
Alig confidence																											.	.	.	.	.
Template Conservation
Template Sequence	H	Q	V	Y	E	A	L	M	Q	D	Y	P	I	Y	S	E	L	A	Q	I	V	N	K	P	S	N	R	V	F	R	L	G	P	E	V	R	T	W	L	K	D	A
Template Known Secondary structure								T	T	T		T										T		T	T								T	T
Template Predicted Secondary structure
Template SS confidence
	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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