Return to main results Retrieve Phyre Job Id

Job DescriptionP31133
Confidence100.00%DateThu Jan 5 11:47:16 GMT 2012
Rank54Aligned Residues303
% Identity15%Templated1y9ua_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.39

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KTLHIYNWSDY. IAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSA. SFLERQLTAGVFQPLDKSKLP
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Template Sequence  DEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQTLD
Template Known Secondary structure 
SS
GGGT


SS
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STT




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   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   108.110.........120.........130.........140.........150.........160.........170.........180.......
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Query Sequence  EWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVF
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Template Sequence  SVVP. . . . . . . . . ANLRGAEGSWYALSLRDRVLYVEKDLKLD. . . . . . . SFRYGDLADPKWKGKVCIRSGQHPYNTALVA
Template Known Secondary structure  S
.........GGGB
GGGS
TT



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BGGGGG
GGGTT



TTS
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Query Sequence  ATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAK. . . . . NGV
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Template Sequence  AMIAHD. . . . . . . . . GAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAI
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BSS
S
S
TTS
SS
TTST
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   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  NVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVR
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Template Sequence  KVVRPTFAGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGV. . KLDAVVASFGPLKVDTLPV
Template Known Secondary structure 

B



B
TT
TTTSTT
SSTT
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T



B

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T
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   221........230.........240.........250.........260.........270......... 280.........290........
 
   343......350.........360......
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Query Sequence  AKLFTLKVQDPKIDRVRTRAWTKV
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Template Conservation     .......              
Template Sequence  AEI. . . . . . . AKYRKQASELVDKV
Template Known Secondary structure  .......T
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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